Protein

View in Explore
Genbank accession
ALP46933.1 [GenBank]
Protein name
side tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,67
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MDETKTKAPLDSPAFTGTPTTPTPPDDAAGTEITNAAFVRKLLAALVDSSPEALDTLNELAAALGNDPNFATTVTKALAGKQPLNDVLTAISELPQREDNLLCFNQDGNASLSPLSEKARSLLAQSTVEAMRNELGLKSAAVRDIQTDIYDRTEGCVALPGAFGYGAYPAQRKEFDKYATSATFASWVQTTPPGRYLVVQYGGPNSNDIIKGVVFTGEVEIKMLEIATHENQTSRDKFVIFNGVNHDVYCCEVRASSTNIRWTCLSQNLTAIDGARWLYNVAGPWYDVPFRDVAVGGLIHAVYRAANAGEYTIKRGDNVSGSTLTPCAITVSDDGSARYMLDTRRHFSGSYVSLGNCTIATSDFIFGLFVRVA
Physico‐chemical
properties
protein length:373 AA
molecular weight: 40207,62310 Da
isoelectric point:4,99259
aromaticity:0,08579
hydropathy:-0,15764

Domains

Domains [InterPro]
DC_1589
STR
1–361
DC_1589
IPR051934
Unmapped
5–92
IPR051934
ALP46933.1
1 373
Architecture
STR
STR 1-361 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage SerU-LTIIb
[NCBI] 		1759532 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALP46933.1 [NCBI]
Genbank nucleotide accession
KU052038.1 [NCBI]
CDS location
range 7193 -> 8314
strand +
CDS
ATGGACGAGACGAAAACAAAAGCGCCACTGGACAGTCCGGCGTTTACTGGTACGCCAACCACACCAACCCCGCCAGATGACGCAGCAGGCACTGAAATAACCAATGCGGCGTTTGTCCGCAAACTGCTCGCCGCACTGGTTGACTCGTCACCGGAAGCCCTGGACACGCTGAACGAGCTGGCAGCGGCGCTGGGCAATGACCCGAACTTTGCGACAACGGTTACTAAAGCCCTGGCAGGTAAACAACCGCTGAACGACGTGCTGACGGCAATCAGTGAACTGCCGCAACGGGAAGATAACCTTCTGTGCTTTAATCAGGACGGAAACGCTTCATTGTCTCCGCTGTCAGAAAAAGCCCGTTCACTGCTGGCACAGTCCACAGTGGAGGCCATGCGCAATGAGCTTGGGCTGAAAAGCGCAGCGGTAAGGGACATTCAGACAGACATTTACGACCGAACTGAAGGTTGTGTGGCGCTTCCGGGAGCTTTCGGTTATGGCGCATATCCCGCACAACGTAAGGAGTTTGACAAATACGCGACATCAGCAACATTTGCTTCTTGGGTACAGACCACGCCCCCGGGGCGCTATCTTGTCGTTCAATATGGTGGCCCAAATTCTAATGACATTATAAAGGGGGTTGTTTTTACCGGAGAGGTAGAGATAAAAATGCTGGAAATAGCGACCCATGAAAACCAAACCAGTCGCGATAAATTTGTCATTTTTAATGGGGTTAATCATGACGTGTATTGTTGTGAGGTCAGGGCGAGCAGTACGAACATACGCTGGACATGCCTGAGTCAAAACTTAACCGCGATAGATGGTGCGAGATGGCTGTATAACGTAGCTGGCCCGTGGTACGACGTACCATTCAGGGATGTGGCAGTTGGCGGATTAATTCATGCTGTGTACCGTGCAGCAAATGCTGGCGAATATACGATAAAACGTGGTGATAACGTGAGCGGCAGTACGCTGACACCCTGTGCTATTACGGTATCGGATGATGGCTCAGCACGATATATGCTGGATACCAGACGGCACTTTTCGGGGAGCTATGTCTCGCTGGGCAATTGCACCATAGCGACCAGCGATTTTATTTTTGGTCTGTTTGTGAGAGTTGCCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6aa7bccc95c69eb344f43420faa83ea48b4c78ba052ae9fb62ef4f5fa6d51014
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7431
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The chromosomal nature of LT-II enterotoxins solved: a lambdoid prophage encodes both LT-II and one of two novel pertussis toxin-like toxin family members in type II enterotoxigenic Escherichia coli (ETEC) Jobling,M.G. 2016-01-10 — GenBank