Protein

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Genbank accession
YP_007877502.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,77
Protein sequence
MHPLQNGSQDTNRPPKKPLTGSPGWFTESGDNNVPSYPGADWFNHVIAEFQNMLASQGIAFNPDSDDHLSKAFLGAFANKETVFLSTEDMVTGTNFNGKSVTHEIGNIYKTFNNGTFNHWKVTAETANGFTKVALGQSLTASMLRTNGENLAHPPQQATTYAEPISRFVYGLEYTFAITKGFSSKSRTLKFIHSGDSTTAGDAAEGFPPAVVMANYGEDYGLYQTQLNRGHSGQDTVRWNQQYVSEDIDDHGDMDCYIVRWGINDGSSHGDPEIFEAALRQGLQKLRNHRSYDELTIVLMSPNSTYDTPNGRDSQWYESISLSIKNAARDFQCVYFDTYGLFRDSYHGAGVYMDDPFGDGRGIHPKKEFNTAIYSYLANLLFSLPAGLRANSNRVSNIPSFMNMPNFNTPLENYHHGISIYRATLDEGWPLDGSVTTERTADNVYYQRLVEYQSGSPRRIYTRIGAGVDSSVSPWRKFGLISLDYATDWGELSDFEPLRLHMSGQLVTLTGGATWTGSGEPGANAKVSLIPADLRPANNVQFIAKTQRGLTFYHTMVSISPNGDVIVQSPESGELVFFSMSWNPADTI
Physico‐chemical
properties
protein length:588 AA
molecular weight: 65164,29240 Da
isoelectric point:5,31504
aromaticity:0,11735
hydropathy:-0,47840

Domains

Domains [InterPro]
DC_1375
STR
51–569
DC_1375
IPR036514
STR
177–381
IPR036514
SSF52266
STR
187–382
SSF52266
cd00229
ENZ
195–384
cd00229
IPR013830
ENZ
195–367
IPR013830
YP_007877502.1
1 588
Architecture
STR
STR 51-569 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007877502.1
1 588
Domain Start End Length (AA) Confidence
N-terminal 1 216 216 0,7392
Central domain 217 415 200 0,2390
C-terminal 416 588 172 0,8791
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-216
Central
217-415
C-terminal
416-588

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage martha 12B12
[NCBI] 		573175 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007877502.1 [NCBI]
Genbank nucleotide accession
NC_021070.1 [NCBI]
CDS location
range 91 -> 1857
strand -
CDS
ATGCATCCTTTACAAAATGGCAGTCAAGATACGAACCGCCCTCCTAAGAAGCCTCTTACGGGTTCACCTGGTTGGTTTACTGAATCTGGTGATAACAACGTCCCTAGCTATCCTGGTGCCGATTGGTTTAATCATGTGATAGCTGAGTTTCAGAATATGCTAGCTTCGCAGGGGATAGCGTTTAACCCAGATAGTGATGACCATCTTTCAAAAGCCTTTTTAGGAGCGTTTGCTAATAAAGAAACCGTTTTTTTGTCAACTGAAGACATGGTGACGGGAACAAACTTTAATGGTAAATCTGTCACGCATGAAATTGGTAATATATATAAAACATTTAACAATGGAACTTTTAACCATTGGAAAGTTACAGCGGAAACAGCTAATGGTTTTACCAAGGTTGCTTTGGGTCAATCACTAACTGCGTCAATGTTACGTACTAACGGTGAAAATTTAGCACATCCACCTCAGCAAGCCACAACGTATGCAGAACCGATTAGTCGATTTGTATATGGTTTAGAATACACATTTGCGATTACAAAAGGCTTTTCCTCTAAAAGTAGAACTCTGAAATTTATACACTCAGGTGACAGCACTACCGCTGGAGATGCTGCTGAAGGGTTTCCCCCTGCCGTAGTCATGGCAAACTATGGAGAGGATTACGGTTTATATCAAACTCAGCTGAATCGAGGGCATAGTGGTCAAGATACAGTGCGCTGGAACCAACAATATGTTTCGGAAGATATTGATGACCACGGTGACATGGATTGCTATATCGTTCGTTGGGGTATAAATGATGGTTCTTCGCATGGTGACCCTGAGATTTTTGAAGCAGCACTTCGTCAAGGCTTGCAAAAATTACGAAATCATCGTTCATATGATGAACTAACCATCGTCTTAATGTCGCCGAACTCAACTTATGACACGCCTAACGGTAGAGATTCACAATGGTATGAATCCATTTCGCTCTCGATTAAAAATGCTGCGCGTGACTTTCAGTGTGTGTATTTTGATACTTATGGCCTGTTCAGAGATTCCTATCACGGAGCTGGAGTCTATATGGATGACCCTTTCGGAGATGGGAGAGGTATTCATCCAAAAAAAGAGTTTAATACGGCAATATACTCGTATTTAGCAAATCTACTATTTAGTTTGCCAGCTGGGTTGCGAGCAAACTCTAATAGGGTTTCTAATATTCCGTCATTTATGAATATGCCTAACTTCAATACTCCTTTAGAAAACTATCACCACGGTATAAGTATTTATCGAGCAACGTTGGATGAAGGATGGCCTCTTGATGGTTCAGTCACAACAGAAAGAACTGCGGATAATGTCTATTATCAACGGCTTGTGGAGTATCAAAGTGGATCACCAAGGCGTATATATACACGGATTGGTGCGGGCGTGGACAGCTCCGTTTCTCCGTGGAGAAAGTTTGGCCTTATTTCACTAGATTACGCTACCGATTGGGGGGAGCTTTCTGACTTCGAGCCTTTGAGACTTCACATGTCAGGTCAGCTAGTTACCCTAACCGGTGGAGCAACGTGGACAGGAAGTGGCGAGCCTGGTGCAAATGCAAAAGTATCTCTGATTCCAGCCGACCTACGTCCCGCAAATAATGTTCAATTTATAGCAAAGACTCAGCGTGGACTTACTTTTTATCATACTATGGTATCTATATCTCCTAACGGGGACGTCATTGTGCAATCCCCAGAAAGCGGCGAATTAGTTTTCTTTTCCATGAGCTGGAACCCAGCCGATACGATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
044ef55384d09458ad18302c5ad34a549dab853b106352faf6cfe5888a2a195a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7177
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage martha 12B12 Henn,M.R., Polz,M., Kauffman,A.K.M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Richards,J., Rizzolo,K., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank