Protein

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Genbank accession
APC44938.1 [GenBank]
Protein name
major tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,64
Protein sequence
MHLPNGAQIFVETSRGVEVEATAITNAENPVATVASKGDLVKGDYVIVTQSTWAKMVSRVLIVTDAQETSITLAGIDTSDTLVFPAGGTMSFAKITGWTEIPCVQEIGQDGGEQQYYTYQCLSDDKEQQIPTFKSAVSLTYTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPKASEMRMWAGILSFNDIPSTQVNEMETVELAVSLKGDFTFISSTLASPGA
Physico‐chemical
properties
protein length:222 AA
molecular weight: 24095,94080 Da
isoelectric point:4,48360
aromaticity:0,08559
hydropathy:-0,02027

Domains

Domains [InterPro]
DC_0037
ATT
1–50
DC_0037 IPR014918
APC44938.1
1 222
Architecture
ATT
TAS
ATT 1-50 | TAS 51-214 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APC44938.1
1 222
Domain Start End Length (AA) Confidence
N-terminal 1 213 213 0,6483
Central domain 214 213 1 0,0543
C-terminal 214 222 8 0,9820
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-213
Central
214-213
C-terminal
214-222

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage SH6
[NCBI] 		1913048 Uroviricota > Caudoviricetes > Drexlerviridae > Tunavirus > Tunavirus SH6
Host Shigella sp.
[NCBI] 		625 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APC44938.1 [NCBI]
Genbank nucleotide accession
KX828710 [NCBI]
CDS location
range 18787 -> 19455
strand +
CDS
ATGCACTTACCAAATGGCGCACAAATTTTCGTGGAAACCTCTCGCGGGGTAGAGGTTGAGGCAACCGCTATCACTAACGCAGAAAATCCTGTTGCTACAGTTGCATCTAAGGGAGACTTGGTAAAAGGCGATTACGTTATTGTAACTCAGTCAACCTGGGCCAAGATGGTCAGTCGAGTGCTAATTGTTACTGACGCTCAGGAAACAAGCATCACTCTAGCTGGGATTGACACCTCTGATACTCTTGTTTTCCCGGCTGGCGGTACGATGAGCTTTGCAAAAATTACTGGCTGGACTGAGATTCCTTGCGTACAGGAGATTGGTCAGGACGGCGGCGAGCAGCAGTATTACACTTATCAGTGTTTGTCCGACGATAAAGAGCAGCAGATCCCAACGTTTAAATCTGCGGTATCGCTAACGTACACTTTCGCGCACGAATTTGATAACCCGATCTACCCGATTCTGCGTAAGCTGGATTCGTCTGGTCAGGTAACAGCGGTTCGAATGTACGTGCCGAAAGCGAGCGAAATGCGTATGTGGGCTGGCATCTTGTCGTTTAACGATATCCCATCCACACAGGTTAACGAAATGGAAACGGTGGAACTCGCCGTATCCCTGAAAGGTGACTTTACTTTCATTTCCTCCACTCTGGCATCGCCTGGCGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9f1dea0e8095636dda105f27b83638a953e386067240ba9beabbe8c7245f02cd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9526
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of two polyvalent phages infecting Enterobacteriaceae Hamdi,S., Rousseau,G.M., Labrie,S.J., Tremblay,D.M., Kourda,R.S., Slama,K.B. and Moineau,S. 2017 28091598 GenBank