Protein

Genbank accession
AFN39878.1 [GenBank]
Protein name
phage tail fiber
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,97
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MYKIKDVETRIKNDGVDLGDIGCRFYTEDENTASIRIGINDKQGRIDLKAHGLTPRLHLFMEDGSIFKNEPLIIDDVVKGFITYKIPKKVIKHAGYVRCKLFLEKEEEKIHVANFSFNIVDSGIESAVAKEIDVKLVDDAITRILKDNATDLLSKDFKEKIDKDVISYIEKNESRFKGAKGDKGEPGQPGAKGEAGKKGEQGAPGKNGTVVSINPDTKMWQIDGKDTDIKAEPELLDKINIANVEGLEDKLQEVKKIKDTTLNDSKTYTDSKIAELVDSAPESMNTLRELAEAIQNNSISESVLQQIGSKVSTEDFEEFKQTLNDLYAPKNHNHDERYVLSSQAFTKQQADNLYQLKSASQPTVKIWTGIENEYNYIYQKDPNTLYLIKG
Physico‐chemical
properties
protein length:390 AA
molecular weight: 43827,90170 Da
isoelectric point:5,29355
aromaticity:0,06923
hydropathy:-0,65821

Domains

Domains [InterPro]
IPR018913
4–141
IPR018913 G3DSA:1.20.5.320 Coil
G3DSA:2.60.40.3350
14–125
G3DSA:2.60.40.3350
AFN39878.1
1 390
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage StauST398-1
[NCBI] 		1195068 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 Bacteria > Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFN39878.1 [NCBI]
Genbank nucleotide accession
JX013863.1 [NCBI]
CDS location
range 6235 -> 7407
strand -
CDS
ATGTACAAAATAAAAGATGTTGAAACGAGAATAAAAAATGATGGTGTTGACTTAGGTGACATTGGCTGTCGATTTTACACTGAAGATGAAAATACAGCATCTATAAGAATAGGTATCAATGACAAACAAGGTCGTATCGATCTAAAAGCACATGGCTTAACACCTAGATTGCATTTGTTTATGGAAGATGGCTCTATATTCAAAAATGAGCCCCTTATTATCGACGATGTTGTAAAAGGGTTCATTACCTACAAGATACCTAAAAAGGTTATCAAACACGCTGGTTATGTTCGTTGTAAGCTGTTTTTAGAGAAAGAAGAAGAAAAAATACATGTCGCGAACTTTTCTTTCAATATCGTTGATAGTGGCATTGAATCTGCTGTAGCAAAAGAAATCGATGTTAAATTGGTAGATGATGCTATTACGAGAATTTTAAAAGATAACGCGACAGATTTATTGAGCAAAGACTTTAAAGAGAAAATAGATAAAGATGTCATTTCTTACATCGAAAAGAATGAAAGTAGATTTAAAGGTGCGAAAGGTGATAAAGGCGAACCGGGACAACCTGGTGCAAAAGGTGAAGCAGGTAAAAAAGGAGAACAAGGCGCACCCGGTAAAAACGGTACTGTAGTATCAATCAATCCTGACACTAAAATGTGGCAAATTGATGGTAAAGATACAGATATCAAAGCAGAACCTGAGTTATTGGACAAAATCAATATCGCAAATGTTGAAGGGTTAGAAGATAAATTGCAAGAAGTTAAAAAAATCAAAGATACAACTCTCAACGACTCTAAAACGTATACGGATTCAAAAATTGCTGAACTAGTTGATAGCGCGCCTGAATCTATGAATACATTAAGAGAATTAGCAGAAGCAATACAAAACAACTCTATTTCAGAAAGTGTATTGCAACAGATTGGCTCAAAAGTTAGTACAGAAGATTTTGAGGAATTCAAACAAACACTAAATGATTTATATGCTCCAAAAAATCATAATCATGATGAGCGGTATGTTTTGTCATCTCAAGCTTTTACTAAACAACAAGCGGATAATTTATATCAACTAAAAAGCGCATCTCAACCGACGGTTAAAATTTGGACAGGAATAGAAAATGAATATAACTATATATATCAAAAAGACCCTAATACACTTTACTTAATTAAGGGGTGA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
1af031b2670be9cc5bb934e2a9f2d9ae5cccc56e5f368d3a42257937fabb6707
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8162
Evidence 0,8162
Download PDB

Literature

Title Authors Date PMID Source
Analysis of prophages harbored by the human-adapted subpopulation of Staphylococcus aureus CC398 van der Mee-Marquet,N., Corvaglia,A.R., Valentin,A.S., Hernandez,D., Bertrand,X., Girard,M., Kluytmans,J., Donnio,P.Y., Quentin,R. and Francois,P. 2013 23770143 GenBank
Bacteriophage encoded immune escape in Staphylococcus aureus CC398 van der Mee-Marquet,N., Valentin,A.-S., Corvaglia,A.-R., Bertrand,X., Girard,M., Kluytmans,J., Donnio,P.-Y., Quentin,R., Schrenzel,J. and Francois,P. 2013-08 — GenBank