Protein

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Genbank accession
ATS92185.2 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIGVDSTGAGAVKIMKNDADDPRTTPDSQRSKFLYNSKYALNASIAHIEVINSGFSGSTYQYFPAGTGPSNYQKALGQGGGDAWWFFRNSAFPKMKYNMPLFDVKATRTNTGRFNQQRIQRRYSGKYYNDQGGYFFMGNWAQEPWVKDFSGVVSQYGSFPYGTFQHITTSTLDDAYNRFLSRDKRLIVWNLPGNEEPSLEAPALAPNGTKNIIIRSDKMVIAKPGYNAETANEWQVSFDSRRVPVKVIAAADIAIPAGESFYETGITLPANIALDVHFYEGSTIYYPFNPNMSNGLGADYWFSGSRIYFNSSDTMRARFMLYLDAGDSPTNGSNRVFKTFTEGGQDVVQFLRPGAADPPSWADIVIDTRWPCVQIIAEGYFTVAVGSPLQTVINFDATGMFPMVKYMTKHGGGSEQNFGSWQEAIKLPTVRQRVYSTNSNFECGDSSHCRLTQTSATFVTNRGQPGDYYNDADDPGTWRTEGADNVLGIRYYILGIPTP
Physico‐chemical
properties
protein length:499 AA
molecular weight: 55527,23520 Da
isoelectric point:6,25714
aromaticity:0,13828
hydropathy:-0,44369

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATS92185.2
1 499
Domain Start End Length (AA) Confidence
N-terminal 1 95 95 0,0382
Central domain 96 294 200 0,0442
C-terminal 295 499 204 0,9944
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-95
Central
96-294
C-terminal
295-499

Taxonomy

  Name Taxonomy ID Lineage
Phage Sinorhizobium phage HMSP1-Susan
[NCBI] 		2049306 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sinorhizobium meliloti
[NCBI] 		382 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATS92185.2 [NCBI]
Genbank nucleotide accession
MG214783 [NCBI]
CDS location
range 24385 -> 25884
strand +
CDS
ATGATCGGAGTGGATAGTACCGGCGCGGGCGCCGTCAAGATCATGAAAAATGATGCTGACGACCCACGCACCACGCCAGATAGTCAACGCTCCAAATTTCTCTATAACTCCAAATACGCGCTTAACGCGTCGATTGCGCATATCGAAGTAATTAACTCCGGTTTCAGCGGTAGCACGTACCAATATTTCCCCGCCGGTACAGGTCCAAGCAATTATCAAAAAGCTCTTGGTCAAGGCGGTGGCGATGCATGGTGGTTCTTCCGTAACTCCGCGTTCCCGAAAATGAAATATAATATGCCGCTTTTTGACGTGAAAGCTACGCGGACGAACACGGGACGTTTCAATCAGCAACGTATTCAGCGCCGATATTCCGGCAAGTATTATAATGATCAAGGCGGCTATTTCTTTATGGGGAATTGGGCGCAAGAACCTTGGGTGAAAGACTTTAGCGGAGTTGTCAGCCAATACGGCTCATTCCCCTACGGGACGTTTCAGCATATCACCACGTCCACGCTAGACGACGCTTACAATCGGTTCCTATCGCGCGATAAACGGCTGATTGTGTGGAACCTACCCGGCAATGAAGAACCTTCGCTAGAAGCTCCCGCGCTGGCGCCTAACGGCACAAAGAATATCATCATTCGTTCTGATAAGATGGTTATCGCCAAACCCGGTTATAACGCGGAGACGGCGAACGAATGGCAAGTGTCTTTTGATAGCCGTCGCGTACCTGTGAAAGTCATTGCTGCTGCTGATATCGCTATCCCGGCTGGCGAATCGTTCTACGAGACAGGAATAACACTCCCCGCAAATATTGCGCTTGACGTGCATTTTTACGAAGGGTCCACAATCTATTACCCGTTTAATCCGAATATGAGTAATGGTCTAGGTGCGGATTATTGGTTCAGCGGATCACGGATATATTTTAATTCCTCCGATACGATGCGTGCCCGGTTCATGCTGTACCTCGACGCGGGGGATAGTCCGACGAACGGAAGCAACCGTGTATTCAAGACATTCACGGAAGGTGGTCAAGACGTAGTGCAGTTCTTGCGCCCCGGTGCAGCGGACCCGCCATCATGGGCGGATATCGTCATAGATACGCGGTGGCCTTGCGTTCAGATTATCGCAGAAGGTTATTTCACTGTGGCGGTAGGTAGCCCGCTCCAAACGGTCATTAATTTTGACGCTACGGGTATGTTTCCAATGGTCAAATATATGACCAAGCACGGTGGCGGCTCAGAACAGAATTTCGGTAGCTGGCAAGAGGCAATCAAGCTTCCAACTGTTCGGCAGCGCGTCTACTCGACTAACAGCAATTTCGAATGCGGCGATAGTTCCCATTGCCGCCTCACACAGACAAGCGCAACGTTTGTCACCAATCGCGGGCAACCGGGTGATTATTATAACGACGCGGATGACCCCGGCACATGGCGTACAGAAGGCGCCGACAACGTTCTAGGTATCCGATATTACATTCTTGGAATTCCAACCCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
68e2c9c67b87c11800c6e7445ed19ecb6719312ccda720531a795944a4de0dd6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5539
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Nucleotide Sequence of Sinorhizobium Bacteriophage HMSP1-Susan Martinez-Vaz,B.M., Fleagle,B., Imamovic,A., Toledo,S., Couves,M., Jensen,A., Vang,M., Ashley,S., Young,N.D. and Sadowsky,M.J. 2018-05-03 — GenBank