Protein

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Genbank accession
QDB70934.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTVPTNTSVVEYEGNGVTTAFPVPFKFPANGDLVVTQVYNDVSTTLSLGANYSVVGAGAQAGGAVIVNIPTPAGATLSISRSLAAVQETDLRNQGRYFAETHESVFDYLTMLIQQGFSGLSRALRRPIGKDYFDAENRRISNVSDPVLSQDAVTRKWSEEYFSDLISDIQGPVNNAQNVLYVDGDGISTTVQKGIIKQFTSVSDVRGKAGDKDGDQAVLLGYYQDSPGVGGGNLYWDSLSVEPDNGGSVFAVTGVPNGRWKRDITHGVWAEWFGARNDGSDAAGTTAAVWAAIIALRHDPETIVQYIGGPTVTAYASGRLNFGSGVFALQPDSFDITQDLGLTIVGQGFRGKNQAMKAATTLLCKGVSSGFFFRHYGNGARNLTFKDMDVVYENSDFTGDIVESLTSPGLTLERTRLGCYGGLLGTRVQTARSCIRPTFDEFLRCEDVVFDGAQNGFWSDGARTIPGLSFGGWGTTLINCTFYDLANSMIHHAANRGRSIVNVIGCAFNPINISPARCFDITNIEGINVTGNQFTPSTGSQPTQEWIRLLGSTGAIDGNTFSGPSSKLGTIGGVDPSSIRFSNNRVSCQGGLVVSGGIFTGSGNEYSIADHGVDVSPVAITTLDIGPDIFKSGVSGNSYRISADSSLLGGRINYIFEQDNSNSKFSNVSSRVSIDNVDRRISTIGSLPSTASPYFSGRTYNVTVAGTFTLPTPIPGIRLRVMKSTATALTVSTTSGSNILVGASSARTSAVATAAEIGPAIEFVAFSSASWVAQVLSGSWSFS
Physico‐chemical
properties
protein length:783 AA
molecular weight: 82852,23190 Da
isoelectric point:5,22500
aromaticity:0,09323
hydropathy:-0,05683

Domains

Domains [InterPro]
DC_0055
ATT
8–200
DC_0055 IPR059934 DC_0743
IPR059934
RBD
198–264
IPR059934
QDB70934.1
1 783
Architecture
ATT
RBD
STR
ATT 8-200 | RBD 201-264 | STR 265-783
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDB70934.1
1 783
Domain Start End Length (AA) Confidence
N-terminal 1 284 284 0,9968
Central domain 285 677 394 0,9825
C-terminal 678 783 105 0,9859
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-284
Central
285-677
C-terminal
678-783

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeP_YA3
[NCBI] 		2588095 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa UCBPP-PA14
[NCBI] 		208963 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas aeruginosa

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDB70934.1 [NCBI]
Genbank nucleotide accession
MK819239 [NCBI]
CDS location
range 17634 -> 19985
strand +
CDS
TTGACCGTACCTACTAATACCAGCGTTGTTGAGTACGAAGGCAATGGCGTTACCACGGCCTTCCCTGTTCCTTTCAAATTTCCAGCCAATGGCGACCTAGTGGTAACTCAGGTCTATAACGATGTTTCGACAACCCTTTCGCTTGGGGCTAACTACTCAGTGGTTGGTGCTGGAGCACAGGCTGGTGGAGCGGTAATTGTCAATATACCAACTCCGGCAGGGGCCACTCTAAGCATCTCCAGAAGTCTGGCTGCGGTTCAAGAAACCGACCTGCGCAACCAGGGAAGGTATTTCGCGGAGACGCATGAAAGCGTTTTCGACTATCTCACTATGCTGATTCAGCAGGGATTTTCAGGTCTTTCAAGGGCCTTGAGGCGCCCAATAGGTAAAGACTACTTTGACGCCGAAAATCGAAGAATCTCTAATGTCTCCGATCCTGTGCTTTCGCAGGATGCAGTAACCAGAAAGTGGTCCGAGGAATACTTTTCTGATTTGATCAGTGATATTCAGGGTCCGGTAAACAATGCACAGAATGTGCTTTATGTAGATGGTGACGGAATATCAACTACTGTTCAGAAGGGGATTATAAAACAATTCACTTCTGTCTCTGATGTAAGAGGGAAAGCAGGGGACAAGGATGGAGATCAAGCTGTCCTTCTAGGGTACTATCAAGACTCGCCTGGAGTTGGGGGCGGGAATCTGTACTGGGACTCTCTCTCTGTAGAGCCAGATAATGGCGGATCGGTCTTTGCTGTTACCGGGGTTCCAAATGGTCGCTGGAAGCGCGATATAACGCACGGCGTGTGGGCCGAATGGTTCGGCGCTCGCAATGATGGTTCTGATGCTGCGGGAACTACTGCTGCGGTGTGGGCTGCAATCATCGCACTCCGGCACGACCCGGAGACGATCGTGCAGTACATCGGCGGTCCCACTGTCACAGCGTATGCATCCGGGCGACTGAACTTCGGCAGCGGGGTCTTTGCACTCCAGCCTGATAGTTTCGATATTACCCAGGACCTCGGCCTGACCATCGTCGGGCAGGGATTCAGAGGTAAGAACCAGGCGATGAAGGCGGCTACCACGTTGCTCTGCAAGGGAGTTTCAAGTGGATTTTTCTTCCGCCACTACGGGAATGGCGCCCGTAATTTGACATTCAAAGATATGGATGTCGTATATGAGAACTCGGATTTCACTGGAGATATAGTTGAGAGCCTGACATCTCCCGGCTTGACGCTTGAGAGGACTAGGCTTGGCTGCTATGGAGGCCTTCTTGGAACTCGCGTTCAAACCGCGAGAAGCTGTATCCGACCAACTTTCGACGAATTTTTGCGTTGCGAAGACGTTGTGTTTGATGGCGCTCAGAATGGCTTTTGGTCAGATGGTGCGCGGACAATTCCAGGTCTGTCTTTTGGTGGCTGGGGTACGACCCTTATAAACTGTACGTTCTATGATCTTGCCAATTCCATGATACATCACGCGGCTAATAGAGGTAGAAGTATTGTTAATGTAATTGGGTGTGCGTTCAATCCTATCAATATAAGTCCTGCTAGGTGTTTTGACATTACCAACATTGAGGGAATCAATGTGACCGGAAATCAATTTACACCAAGCACGGGAAGCCAGCCAACGCAAGAATGGATTAGGCTTCTAGGTAGCACTGGCGCTATAGATGGGAATACGTTTTCAGGCCCATCCTCAAAGCTCGGAACCATTGGAGGCGTAGATCCTTCGTCAATCAGGTTCTCTAACAATAGGGTATCCTGCCAAGGTGGTCTTGTAGTATCCGGAGGAATTTTTACAGGCTCTGGAAACGAATATTCTATAGCTGATCATGGAGTTGACGTATCGCCAGTGGCTATTACTACTCTTGATATTGGTCCTGATATTTTCAAGTCTGGAGTATCTGGGAACTCATATCGCATCTCTGCGGATAGCTCCCTTCTTGGCGGGAGAATTAACTACATATTTGAGCAGGATAACTCAAATAGTAAGTTTTCAAATGTTTCCTCAAGGGTCTCAATTGATAATGTTGATAGGAGAATATCTACTATAGGCTCTCTCCCATCTACCGCGTCTCCGTATTTTAGCGGAAGAACCTATAATGTTACCGTTGCGGGTACATTCACATTGCCCACTCCAATTCCGGGAATTAGATTGAGAGTAATGAAAAGCACAGCGACGGCACTGACAGTATCTACCACATCCGGCTCGAATATTCTTGTCGGTGCCAGTTCGGCAAGAACCTCTGCCGTTGCGACAGCCGCCGAGATTGGGCCAGCAATTGAGTTTGTTGCTTTTAGCTCTGCATCATGGGTGGCGCAAGTCCTGTCAGGGTCTTGGTCATTCAGCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
1b59e5accea187680199b71cdfbbfac10b4fd15bc47e9d22b2d8e48b95988a8d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3119
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization, Genome Sequence,and Analysis of Pseudomonas phage vB_PaeP_YA3 Yu,X., Gu,Y., Xu,J., Zhang,R. and Liu,X. 2019-06-18 — GenBank