Protein

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Genbank accession
WPK29744.2 [GenBank]
Protein name
tail needle knob
RBP type
TSP
Evidence DepoScope
Probability 0,95
Protein sequence
MYNIRTDIIVNGDISYDGELIGKIPVPDISTKNKNILIHESDGLYVPDNTINYQGGTGISISSNLISTKISSTQGNILSNDSNGLYVPDNTVSYVAGNGIDVNTNVISAKVSLNSGNILISDANGLYVPNTSIVYSGGTGVSISDNTISTKISTSPSNILTIAEDGLYVPDNTVTYTGSESIKIDNNIISSKISTSLGNILTTDSTGLFVPDNSITYNAGTGITISDDQISTKISSTVGNILTSDINGLFVPNSSITYNGGNGISISDDVISVKVDPTSENILSSTSNGLFVPDNSVSYSAGSGVSISGEVISTKISSTSGNILSTDSTGLFVPNTRINYVGGTGISISSETISTKISTTPGNTLTTDVNGLYVPSGPSSYTAGNGISIDANVISSKISNTSGNILTSDSTGLFVNGNNTTNLIRRKRELYYSNLNIQFTDGIEQNLIQILKSFTPTSGTLDSFFNTTSNKLNVYNFNSSLNFKLNIYGTWTTSSSNMSFAINFTNTQFNNINQVRTPTITVDTISFNTFLSVDENGNLVTNGTPITLMSHGGKFTVTNLLLIAEQIVPPSMSGVSVV
Physico‐chemical
properties
protein length:578 AA
molecular weight: 60746,42400 Da
isoelectric point:4,37543
aromaticity:0,06574
hydropathy:-0,02837

Domains

Domains [InterPro]
DC_1780
STR
1–134
DC_1780 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR032395
IPR006626
Unmapped
41–63
IPR006626 IPR006626 DC_1780 DC_1780 IPR038681
DC_1780
STR
205–255
DC_1780 DC_1780
WPK29744.2
1 578
Architecture
STR
STR 1-566 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK29744.2
1 578
Domain Start End Length (AA) Confidence
N-terminal 1 574 574 0,7476
Central domain 575 574 1 0,0232
C-terminal 575 578 3 0,8096
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-574
Central
575-574
C-terminal
575-578

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage BAU.Micro_ELP-22
[NCBI] 		3031943 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK29744.2 [NCBI]
Genbank nucleotide accession
OR699282 [NCBI]
CDS location
range 149944 -> 151680
strand -
CDS
ATGTATAATATAAGAACAGATATTATTGTAAATGGTGATATCAGTTATGACGGCGAACTAATAGGCAAGATACCAGTGCCTGATATTAGTACTAAAAATAAAAATATTTTAATTCATGAAAGTGATGGTTTATATGTTCCAGATAATACTATTAACTATCAAGGTGGAACTGGTATATCAATATCTTCTAATTTAATATCCACAAAAATAAGTTCAACACAAGGCAATATTCTTAGTAATGATTCTAATGGTTTGTATGTTCCTGATAATACTGTAAGTTATGTAGCTGGAAATGGTATAGATGTTAATACAAATGTTATATCTGCTAAAGTGAGTTTAAATTCTGGAAATATTCTGATATCTGATGCTAATGGTTTATATGTACCTAATACCTCAATTGTGTATTCTGGTGGCACGGGTGTATCAATAAGTGATAATACTATCTCAACTAAAATCAGTACATCACCTAGTAACATCCTCACGATTGCCGAAGATGGTTTATATGTACCTGATAATACCGTAACATATACAGGTAGTGAAAGTATTAAAATAGATAATAATATTATATCATCAAAAATAAGCACATCTTTAGGAAATATCCTTACAACTGATAGTACTGGTCTATTCGTGCCGGATAATTCGATAACTTATAATGCTGGTACTGGCATTACTATTAGTGATGACCAAATAAGTACTAAAATTAGTTCTACTGTTGGTAATATACTAACATCAGATATTAATGGATTATTCGTACCTAATAGCTCAATTACTTATAATGGAGGAAATGGAATTTCAATTAGTGATGATGTAATAAGTGTGAAGGTTGACCCGACATCAGAAAACATACTATCTTCTACAAGTAATGGTTTATTTGTGCCTGATAATTCAGTATCTTATAGTGCTGGTTCCGGTGTTTCTATCAGTGGTGAAGTAATCAGTACTAAAATTAGTTCTACTTCTGGTAATATACTATCTACTGACAGTACTGGATTATTTGTACCTAATACAAGAATAAATTACGTTGGTGGTACTGGTATATCTATTAGTTCTGAAACAATTTCAACTAAAATAAGCACAACGCCAGGAAATACGTTAACAACTGACGTAAATGGGTTGTATGTTCCATCTGGGCCATCCTCATATACTGCGGGAAATGGTATATCTATTGACGCTAATGTAATTTCATCTAAAATCAGTAATACCTCTGGTAATATATTAACATCAGATAGTACTGGATTATTTGTTAATGGTAATAATACTACTAACCTAATTCGTCGAAAAAGAGAATTATATTATTCAAACTTAAATATACAATTCACTGATGGAATTGAACAAAATTTAATTCAAATACTTAAATCATTCACACCCACTAGTGGAACACTAGATAGTTTCTTCAATACAACAAGTAATAAGTTAAATGTTTATAATTTCAATTCCTCTCTAAATTTCAAATTAAATATATACGGTACATGGACTACTAGTTCGTCTAATATGAGTTTTGCTATTAATTTTACAAATACTCAATTTAATAATATCAATCAAGTTAGAACACCAACTATCACGGTTGATACTATTTCATTTAATACATTTTTAAGTGTTGATGAAAATGGTAACCTAGTAACTAATGGAACACCTATTACGTTAATGTCACATGGTGGTAAGTTTACAGTAACTAATTTATTATTAATTGCTGAACAAATCGTTCCACCTTCAATGAGTGGAGTTTCTGTAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5bda8fadb5c25ac41bf433f60fca9b7641e5ec73723e1fc6b42b2ee27a3c6a40
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6858
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50