Protein

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Genbank accession
XOD31661.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,61
Protein sequence
MNSVATHEYRGVIRLGTQTEINNNLGGVAVTGETLNGRGATGSMRGVVKLTTQAGIAPEGDSSGALAWNADVINTRGGQTINGSLNLDHLTANGIWSRGGMWKNGDQPVATERYASERVPVGTIMMFAGDSAPTGWIMCHGGTVSGDQFPDYRNVVGSRFGGDWNNHGIPDMRGLFVRGAGTCGHILNQRGQDGYGKDRLGVGCDGMHVVGVQAQQMSYHKHAGGWGEYNRSEGPFGASVYQGYLGTRKYSDWDNASYFTNDGFELGVPRDAHGTLNREGLIGYETRPWNISLNYIIKIH
Physico‐chemical
properties
protein length:300 AA
molecular weight: 32258,37040 Da
isoelectric point:6,54571
aromaticity:0,09000
hydropathy:-0,47167

Domains

Domains [InterPro]
DC_1413
STR
1–300
DC_1413
SSF69349
STR
31–131
SSF69349 IPR044916
G3DSA:2.10.280.10
Unmapped
31–71
G3DSA:2.10.280.10 IPR037053 IPR027448
IPR015173
STR
31–109
IPR015173 SSF88874
IPR011083
ATT
122–177
IPR011083
XOD31661.1
1 300
Architecture
STR
ATT
STR
STR 1-107 | ATT 108-177 | STR 178-300
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD31661.1
1 300
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,5514
Central domain 11 209 200 0,3047
C-terminal 210 300 90 0,9982
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-300

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage sb1
[NCBI] 		3387546 Viruses >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD31661.1 [NCBI]
Genbank nucleotide accession
PQ666539.1 [NCBI]
CDS location
range 92427 -> 93329
strand +
CDS
ATGAATTCTGTTGCAACACATGAATATAGGGGTGTTATACGTCTAGGAACACAAACTGAAATTAATAATAATTTAGGCGGTGTTGCAGTAACAGGTGAAACACTAAATGGTCGAGGAGCTACCGGTTCTATGCGTGGAGTAGTTAAATTAACGACGCAAGCCGGTATTGCCCCTGAAGGTGATAGCTCTGGAGCATTAGCATGGAACGCAGATGTAATTAATACACGCGGTGGACAAACTATTAATGGTTCTTTAAATTTAGACCATCTTACAGCAAATGGAATTTGGTCACGCGGTGGAATGTGGAAAAATGGCGATCAACCTGTTGCCACTGAAAGATATGCGTCCGAAAGGGTTCCAGTTGGAACTATTATGATGTTTGCGGGTGATTCAGCACCTACAGGTTGGATTATGTGTCATGGTGGAACCGTGTCAGGTGACCAATTTCCTGATTATAGAAACGTAGTTGGATCGAGATTTGGTGGTGATTGGAATAATCATGGTATTCCTGATATGCGAGGTCTTTTCGTCAGAGGAGCCGGTACTTGCGGTCATATTTTAAATCAACGAGGACAAGATGGTTATGGAAAGGATAGACTTGGTGTAGGATGTGACGGAATGCATGTTGTTGGTGTCCAGGCACAACAAATGTCATACCATAAACACGCCGGTGGTTGGGGAGAATATAACAGAAGTGAAGGCCCATTTGGCGCGTCAGTTTATCAAGGATATCTTGGAACTAGAAAATATTCCGACTGGGATAATGCTTCATACTTCACTAATGATGGATTTGAATTAGGTGTACCGAGAGATGCTCATGGTACACTTAATCGTGAAGGATTAATTGGTTATGAAACTAGACCATGGAATATATCATTAAACTATATTATTAAAATTCATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
05091aae6218120443944db3297ac0f7071d7325f7cffa098889453a3e38554d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5583
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50