Protein

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Genbank accession
BEQ12905.1 [GenBank]
Protein name
putative right-handed parallel beta-helix repeat-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTLSVDVLESLDKTVNIAVKDLVTLSVIGNTLYTVTNYAALAVVNPAQHPRVYIQGYYNAGDGGDGYYTYSGGWVLQHSGSVNILQFGAVPGLSGNNYAAITAAINAVKNYGTPGRGGVVIIPNGTFTYAGTLLLDSQCVSIRGQGGHASFLRGTTLDVPLVKITAPYCFITGVEVATSGTGTAGSTGIEVSGSDSTILDTVVAGVFDGVRYRGGSMHKVDRIAINDCGSTGFLFYGDTLFLNDVFISNFFIGSNDPSKFALGHFRALGRVEALMLSKGDTIGGTFAFTCDALGTSGLRYSSFESVYFDSTSQGAIFEDAAHLHFTDCWASNGRGFAAPAITFNRCKNFSVKGLQAYNAGGAGALFNNCSSFSVANSDATANSVDGSNAGFTLINCTRFTISDCTGEKGATGKQSFGLLVGAGCTDYRLLGNNFYDNISGPIAEDAGNSNREVAFNRGYVTYTKGAGSLPASTTSMTVNHGLVRTPLLQDISLTPNGATASPLYVSAVNATTFTVGTLNANAGASPFCWKADIMK
Physico‐chemical
properties
protein length:536 AA
molecular weight: 55807,71870 Da
isoelectric point:5,74355
aromaticity:0,10448
hydropathy:0,11884

Domains

Domains [InterPro]
IPR012334
STR
78–264
IPR012334 IPR012334
IPR011050
STR
80–530
IPR011050
DC_2234
RBD
300–533
DC_2234
BEQ12905.1
1 536
Architecture
STR
STR 78-533 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BEQ12905.1
1 536
Domain Start End Length (AA) Confidence
N-terminal 1 97 97 0,9827
Central domain 98 459 363 0,9966
C-terminal 460 536 76 0,9900
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-97
Central
98-459
C-terminal
460-536

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ep4
[NCBI] 		3057492 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Actinidiaevirus
Host Pseudomonas syringae pv. actinidiae
[NCBI] 		103796 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BEQ12905.1 [NCBI]
Genbank nucleotide accession
LC776701 [NCBI]
CDS location
range 39025 -> 40635
strand +
CDS
ATGAGCACATTAAGCGTTGATGTACTAGAGTCACTCGACAAGACAGTTAATATAGCAGTTAAAGATTTGGTAACCCTGTCTGTTATTGGTAACACCCTTTACACTGTAACAAACTATGCAGCGCTTGCTGTCGTAAACCCAGCACAACATCCACGGGTGTATATCCAGGGATACTACAACGCAGGCGACGGTGGCGATGGCTACTACACCTACAGTGGCGGTTGGGTCTTACAACACTCAGGCTCCGTAAACATCCTACAGTTTGGGGCGGTACCCGGTTTATCTGGCAATAATTATGCGGCTATTACAGCAGCTATTAACGCCGTAAAGAACTACGGTACTCCAGGCAGGGGCGGGGTAGTTATTATCCCTAATGGCACGTTCACGTACGCGGGTACGCTCCTGCTTGATAGCCAGTGCGTTAGTATTCGTGGACAAGGTGGCCACGCTAGTTTTCTGCGAGGGACTACGCTGGACGTACCCCTAGTGAAAATCACAGCTCCGTACTGTTTCATTACGGGCGTAGAAGTCGCCACGTCGGGAACAGGTACTGCCGGGTCTACAGGGATAGAAGTATCCGGCTCGGATTCCACTATCTTGGATACAGTAGTTGCGGGCGTATTTGATGGTGTGCGCTATCGCGGCGGTAGCATGCACAAAGTGGACCGTATCGCCATTAACGATTGTGGTAGCACCGGGTTCCTGTTCTATGGGGATACTCTGTTTCTGAACGATGTATTTATCTCGAACTTCTTCATTGGTAGTAACGATCCTTCTAAGTTTGCGCTTGGGCATTTCCGTGCTCTGGGCAGGGTAGAGGCACTGATGTTGAGCAAAGGGGATACGATTGGTGGTACCTTCGCATTCACATGCGATGCGCTGGGCACGTCCGGTTTACGGTACTCAAGCTTTGAATCTGTATACTTCGACAGCACCAGCCAAGGCGCAATCTTTGAAGACGCAGCGCACTTGCACTTTACGGACTGCTGGGCCAGTAACGGCAGGGGCTTCGCGGCACCAGCTATCACGTTTAACAGATGCAAGAACTTCTCCGTTAAAGGGCTACAGGCTTACAATGCTGGGGGCGCAGGCGCGTTGTTCAACAATTGCTCTAGTTTCTCCGTGGCCAATAGCGATGCAACGGCAAACTCGGTGGATGGCTCTAACGCAGGTTTCACGCTGATTAACTGCACCCGCTTTACTATCAGTGATTGTACTGGTGAGAAAGGTGCTACAGGAAAGCAGTCGTTTGGTTTGCTGGTTGGTGCAGGCTGCACAGACTACCGTTTGCTGGGTAATAACTTCTATGACAACATCTCCGGGCCTATTGCCGAAGACGCGGGTAACAGTAACCGGGAAGTAGCATTTAACCGGGGTTACGTAACCTATACAAAAGGTGCAGGTTCCTTACCTGCCAGCACTACTAGTATGACCGTGAATCACGGATTGGTGCGCACACCCCTGTTGCAGGATATCAGCCTCACTCCAAATGGTGCGACTGCCAGTCCTCTGTACGTCAGCGCGGTGAACGCCACTACTTTTACTGTGGGTACGTTGAACGCAAACGCCGGGGCCTCGCCCTTCTGCTGGAAAGCTGACATCATGAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
40e84c17d1e6a9e07770b0f3837e1dfb3c8acbd3e267388720ea7e2b1976ecbe
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8918
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pseudomonas phage Ep4 Aono,M., Yagi,H. and Kobayashi,K. — — GenBank