Protein

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Genbank accession
XOT37991.1 [GenBank]
Protein name
Rz-like spanin
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MMNLIKTYKVYIGLVLALVIIAGACWLTWTVTDSRWQSKYDSLETQYADASAKAQNEARAKELEYDLNISKANAEGAKREAEANTAAADANASVVRLHQRLNTLLANTSTETTGTGLKGRTPNETIVLLTNVFQKSVERNRQLAEFADKSWNAAKQCYDSYNSTR
Physico‐chemical
properties
protein length:165 AA
molecular weight: 18329,35410 Da
isoelectric point:8,49991
aromaticity:0,07879
hydropathy:-0,44303

Domains

Domains [InterPro]
PS51257
STR
1–25
PS51257 Coil
IPR019659
STR
16–164
IPR019659
XOT37991.1
1 165
Architecture
STR
STR 1-164 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EK8
[NCBI] 		3389964 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOT37991.1 [NCBI]
Genbank nucleotide accession
PQ805430.1 [NCBI]
CDS location
range 3097 -> 3594
strand +
CDS
ATGATGAACCTGATAAAGACGTATAAGGTCTATATCGGTTTAGTCCTGGCCCTGGTTATAATAGCCGGGGCTTGTTGGCTAACGTGGACTGTCACGGATTCACGGTGGCAGTCGAAATATGATTCATTGGAAACACAGTATGCTGATGCTTCCGCAAAGGCCCAGAATGAAGCCAGGGCAAAGGAGTTGGAATATGACCTCAATATCTCTAAAGCCAATGCTGAGGGGGCTAAACGGGAAGCTGAGGCTAATACTGCTGCCGCTGATGCTAATGCTTCTGTTGTCCGGTTGCACCAACGACTCAATACGCTACTTGCCAACACCAGCACCGAAACGACCGGCACTGGACTCAAGGGCAGAACCCCCAACGAAACCATCGTTCTGCTTACCAACGTGTTCCAAAAATCTGTCGAACGAAATAGACAACTGGCTGAGTTCGCGGATAAAAGCTGGAACGCAGCTAAACAGTGTTATGACAGCTACAATTCGACACGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
54d67d869a26c163c66106f7997095b714f6d224b400148c8c733a1429a947bc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7855
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Investigation of the effectiveness of bacteriophages isolated from environmental samples against clinical strains of Extraintestinal pathogenic Escherichia coli (ExPEC) producing extended-spectrum beta-lactamase (ESBL) Kulubecioglu,E., Karaynir,A., Bozok,T., Salih Dogan,H., Coral,G., Bozdogan,B. and Ocal,M.M. — — GenBank