Protein

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Genbank accession
YP_009008822.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,84
Protein sequence
MALRPKYTHLWAESALPGDIGDADVYVPQNPAYPEQAANQYSVGWYVSPRNDLVKQPHQWVNSWAYTVDLAILELVRSGNQYETTVSYRKGGIVNVEGVWWAAKASGKLKPPHVSQWKKTQFADVDEIQAAVAERNAFLDAHEARTDNPHKVTAAQLSADTKAQTDAKVTAVQGDLNTWKPRKDNPHKVTPAQLGVLPVAGGVFTGRVTFPQIAQVGGSVVGLYGGVMGFTLNAYNFGVQPSTEVPVSNNSELLTTSSYEVMRRRASRRYLKAAPEAHFLLANDVHTVPSGLGGGTLTGPATFSGAALKLEAKQSLTTAVTLTSGTIIARVDGVVTAKVGTLPANILSVFQGTWIADLKLWSTLLTKQQCIHQGVTVWLP
Physico‐chemical
properties
protein length:380 AA
molecular weight: 41009,98390 Da
isoelectric point:9,08245
aromaticity:0,08421
hydropathy:-0,16105

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage Spp001
[NCBI] 		1445859 Uroviricota > Caudoviricetes > Chaseviridae > Yushanvirus > Yushanvirus Spp001
Host Shewanella putrefaciens
[NCBI] 		24 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009008822.1 [NCBI]
Genbank nucleotide accession
NC_023594.2 [NCBI]
CDS location
range 1389 -> 2531
strand -
CDS
ATGGCTCTGAGACCCAAGTATACGCACTTGTGGGCGGAGTCGGCGTTACCTGGAGATATCGGTGATGCTGATGTTTATGTTCCACAAAACCCAGCGTACCCTGAACAAGCGGCTAACCAGTACAGCGTCGGCTGGTATGTTTCACCACGAAACGACCTTGTCAAACAACCTCACCAGTGGGTTAACTCGTGGGCGTACACTGTTGACCTTGCAATCCTCGAGCTTGTACGGTCAGGCAACCAGTACGAAACAACTGTCTCGTATCGTAAGGGCGGCATAGTTAACGTAGAGGGTGTATGGTGGGCTGCGAAAGCAAGTGGTAAACTAAAACCGCCGCACGTGTCCCAATGGAAGAAAACTCAGTTCGCTGACGTTGATGAAATTCAAGCAGCTGTAGCTGAGCGAAATGCCTTCTTAGATGCGCACGAAGCCCGCACTGACAACCCGCACAAAGTTACCGCCGCCCAGTTAAGCGCGGACACCAAAGCACAAACCGACGCGAAGGTAACCGCAGTACAAGGCGACTTGAATACATGGAAACCTCGCAAGGATAATCCGCACAAGGTTACTCCTGCACAACTCGGAGTCTTACCTGTCGCAGGTGGTGTATTCACAGGCAGAGTAACCTTCCCGCAAATTGCGCAAGTAGGTGGTTCCGTTGTCGGCTTGTATGGCGGGGTTATGGGCTTCACGCTCAATGCGTATAACTTTGGAGTCCAGCCCTCGACAGAAGTCCCCGTCTCAAATAATTCTGAATTGTTGACGACGAGTTCTTACGAGGTGATGCGTAGACGTGCGAGCAGGCGTTACCTTAAGGCTGCTCCAGAGGCGCATTTCTTGTTAGCCAACGACGTCCATACAGTTCCATCAGGGCTGGGTGGAGGTACGTTAACAGGGCCAGCAACCTTCTCTGGAGCCGCTCTCAAACTTGAAGCAAAGCAGTCACTAACTACCGCAGTTACGCTCACATCAGGTACTATTATTGCGAGGGTAGACGGCGTGGTGACCGCAAAAGTAGGAACACTCCCTGCAAACATCCTGTCCGTATTTCAAGGGACGTGGATTGCTGACCTCAAGCTTTGGTCTACCTTACTAACTAAACAACAATGTATCCACCAAGGAGTTACAGTATGGCTACCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5de0e0f0f0a1c3a19d5ddf812e3a264cbf05479166fb7f1261b8ff3478d09f3e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5365
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The novel Shewanella putrefaciens-infecting bacteriophage Spp001: Ggenome sequence and lytic enzymes Han,F. 2014-06-01 — GenBank