Protein

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Genbank accession
QGT52417.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MISWLNFEELLIHNPIELINFSKSNIQVALSLYYSEEMDFCVIFYADPLQSSKSGEVYAEGYIDVDMKIYRVKVLSNVYMLKGSKMVKKWAITKTGMRVNPQAKQITMVQAGALMRCEINNNITGWTDRTTQLEINGKTVHINNPLDLIGLGRREIEFNIHKADYWEMFKETMQVPTMKRGGYKNLLKGGWVFVDPFNQGRDLWTKDYFTKAGGTVWQTFGANGDIFDYGTYESGYYGFKCPSNKNDEDYIIGNQLSFLQAGKTYTLQWDMKRTSPYIKGDIQSFIGAGASDWTFVDTSKPFYVNGSLHPSGPDGFVSWNSFIDSEDTSWHRCTIIFTCKSPITDLSKRTIRWRAKKDSSWKVKNIMMFDGSELLGTDFRLHEQEYYDWTFYEGRQGMREVSANFGFYYSEDYAFCSAFKVNIHKGFETRGFNPVTQEFECKAEVENFAQIVNPTIKYYQDIKQIPDNVNWNNTIIYNPKPNGIDYLQCKAKGNYMSLYKVRDDNYSSYVPKRWQSTFFDSVPSSKWLYGGYCYTGTLQTYEIEN
Physico‐chemical
properties
protein length:545 AA
molecular weight: 63256,74760 Da
isoelectric point:6,43329
aromaticity:0,15596
hydropathy:-0,50330

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGT52417.1
1 545
Domain Start End Length (AA) Confidence
N-terminal 1 151 151 0,5856
Central domain 152 350 200 0,3075
C-terminal 351 545 194 0,4445
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-151
Central
152-350
C-terminal
351-545

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage 5205F
[NCBI] 		2675236 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGT52417.1 [NCBI]
Genbank nucleotide accession
MN689504 [NCBI]
CDS location
range 19108 -> 20745
strand +
CDS
ATGATTTCATGGTTAAATTTTGAGGAGTTGCTAATTCACAACCCTATTGAGTTGATTAATTTTAGCAAGAGTAATATACAGGTAGCATTGAGCTTATATTATAGCGAAGAAATGGACTTTTGTGTAATATTTTATGCTGACCCTTTACAAAGTTCTAAAAGCGGAGAGGTATACGCAGAGGGTTATATAGACGTAGACATGAAAATATATAGAGTTAAAGTGTTGAGTAATGTTTACATGCTAAAAGGTTCAAAAATGGTCAAAAAATGGGCTATAACTAAAACAGGTATGCGTGTAAATCCTCAAGCTAAACAAATTACAATGGTTCAAGCAGGGGCGTTGATGAGGTGCGAAATTAATAATAATATTACAGGTTGGACAGACAGAACAACACAATTAGAAATAAACGGTAAAACGGTACATATAAACAACCCGTTAGACCTTATAGGCTTAGGACGTAGGGAAATCGAGTTTAACATTCATAAAGCAGATTATTGGGAAATGTTCAAAGAAACTATGCAAGTACCTACAATGAAACGTGGAGGATACAAAAACTTGCTCAAAGGTGGTTGGGTATTTGTTGACCCTTTTAATCAGGGTAGGGATTTGTGGACTAAAGACTACTTCACAAAAGCAGGCGGAACGGTATGGCAAACTTTTGGAGCTAACGGAGATATTTTTGATTATGGTACTTATGAAAGTGGGTATTATGGTTTTAAGTGTCCTAGTAATAAAAATGATGAAGATTACATTATTGGCAATCAACTGTCTTTTTTACAAGCAGGCAAAACTTACACTTTACAATGGGATATGAAGCGAACATCTCCTTATATAAAAGGAGATATACAAAGCTTCATAGGAGCAGGAGCAAGTGACTGGACTTTTGTAGACACAAGTAAACCGTTTTATGTCAATGGTTCTTTGCATCCATCAGGTCCTGACGGTTTCGTTAGTTGGAATAGTTTCATTGATTCAGAAGATACTTCATGGCATAGATGTACAATCATATTCACTTGTAAAAGTCCTATAACTGACTTGAGTAAACGAACCATACGTTGGAGAGCTAAAAAAGATAGTTCTTGGAAAGTGAAAAATATTATGATGTTTGATGGTTCTGAACTATTGGGGACTGATTTTAGATTACATGAGCAAGAATATTATGATTGGACTTTCTACGAGGGTAGACAAGGAATGCGTGAAGTGTCAGCAAACTTTGGTTTTTATTATAGCGAAGATTATGCTTTTTGTTCAGCATTCAAAGTCAATATACATAAAGGGTTTGAAACAAGAGGTTTTAATCCAGTTACACAAGAATTTGAATGTAAAGCAGAAGTCGAGAACTTTGCACAAATTGTCAACCCTACAATCAAATACTATCAGGACATTAAACAAATACCTGATAATGTGAATTGGAACAATACTATCATATACAACCCTAAACCGAACGGAATAGACTACTTACAGTGTAAAGCTAAAGGGAACTACATGAGCTTATACAAAGTCAGAGATGATAATTATAGTTCATACGTTCCTAAGCGTTGGCAATCTACATTTTTTGATTCAGTTCCTAGCAGTAAATGGTTATATGGTGGATACTGTTATACTGGTACACTACAAACTTATGAGATAGAAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8917f0dcd00c1fee48735382f86041e496d0971c6b6ba701deb1a9566c523a24
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3551
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequences of 31 Lactococcus lactis Bacteriophages Isolated from Foods Marcelli,B., de Jong,A. and Kuipers,O.P. — — GenBank