Protein

View in Explore
Genbank accession
YP_010082084.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,72
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MRNIIGYGGGKGGGGGSTPTEAPDSLHSVAYARVLDLVSEGEIAGLVNGLQSIYLEGTPLANADGSLNFQNVAVDYRPGSQDQEVIPGFPSVESESAVGVELTATMPWVRAIANTQLSAVRVQLSVPALSRADTSSGNINGYRVEYAIDLAVDGGALQQVLATAFDGKTTSKYTRTHRIELPRAKTGWTIRVRRITPNANSGTIADVTRIESIAEVIDAKLRYPNSALIGVRIDARQFSSVPTRSYHLRGRIIRVPSNYDPLTRTYTGLWDGTFKAAYSNNPAWVFYDIVLHKRCGLGDRVSADMVDKWALYQIGQYCDELVPDGRGGQEPRFTCNCYLQQRNDAYPVLQDLASVFRGMAYWASSNVVAVADMPASASYLFHPGNVVDGQFTYAGSARRARKTVALVSWNDPGDQYRAKVEHVEDGDGIARYGIQQTEVTAFGCTSQGQAHRVGQWILLTSRLETETVSFKVGLDAAVVMPGAIIEVADPVRAGRANGGRVRSADGRTVVVDRPVVVREGDTLLLNLPDGTAQRRTISRVDGQGLTVSADWSQPVQAEAVWSVESADLKTQLFRVVSVTESDGLTFDISALEYNQSKFSAIDNGTRIEARPVSVLPPSVQPAPTDVTLATYSVVDQGIATTTMMVAWQQAASAVAYTVEWRRDNGEWVTAGRTGSQSLEVRNIYAGTYVARVRAINALDVASLPAYSAETRLTGKTSPPPVVGTLIATAIVFGIRLDWAFPTGPLDVERTELWWSKTPDRASATKLGDFAFPANTHTLMGLAAGATFYFWARLVDKSGNVGAWYPSGNGVLGMSSDQASDILSYMKGQIGKTQLAGDLLSAVDSIDPPMAGSDEDFAGDGTVYAGIVSTQSVLEEANRAIAQQVTTVQATVAQSSAAVQVAQQAVAEQGGRLAAMYTIKTQIAANGRTYLAGIGVGVENDKGVIESQVLIAADRFAVLHPNGDSVLTPFVIQGGQVFMDSAFIADGTITSAKIGDSIQSSNFVAGQTGWRLSKSGLFENNGNGAGGRRVDTSALTQIYDSAGTLRVRLGVW
Physico‐chemical
properties
protein length:1051 AA
molecular weight: 112315,63380 Da
isoelectric point:5,44793
aromaticity:0,07897
hydropathy:-0,10124

Domains

Domains [InterPro]
DC_0014
STR
1–1051
DC_0014
IPR053171
Unmapped
8–849
IPR053171 IPR015406
IPR055385
ATT
92–219
IPR055385 IPR032876 IPR013783
IPR003961
STR
621–697
IPR003961
IPR036116
STR
633–701
IPR036116
YP_010082084.1
1 1051
Architecture
STR
ATT
STR
ATT
STR
STR 1-91 | ATT 92-219 | STR 220-340 | ATT 341-501 | STR 502-1051
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010082084.1
1 1051
Domain Start End Length (AA) Confidence
N-terminal 1 537 537 0,8187
Central domain 538 999 463 0,0416
C-terminal 1000 1051 51 0,7021
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-537
Central
538-999
C-terminal
1000-1051

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage Dina
[NCBI] 		2759732 Uroviricota > Caudoviricetes > Dinavirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010082084.1 [NCBI]
Genbank nucleotide accession
NC_055026.1 [NCBI]
CDS location
range 29215 -> 32370
strand +
CDS
ATGCGCAACATCATCGGCTACGGTGGCGGCAAGGGCGGCGGCGGCGGCAGCACGCCAACCGAAGCGCCGGACAGCCTGCACTCGGTCGCCTATGCGCGCGTGCTGGATCTCGTTTCCGAGGGCGAGATCGCGGGCCTGGTCAACGGCCTGCAGAGCATCTATCTCGAGGGCACGCCGCTGGCCAACGCCGACGGCTCGCTCAATTTTCAGAATGTGGCCGTCGACTACCGCCCGGGCTCGCAGGATCAGGAGGTCATTCCCGGCTTCCCCTCGGTGGAGAGCGAGAGTGCTGTCGGTGTCGAGCTGACCGCGACCATGCCCTGGGTGCGTGCGATCGCGAACACGCAACTGTCGGCGGTGCGCGTGCAGCTGTCGGTGCCGGCGCTGTCGCGAGCGGACACCAGCAGCGGGAATATCAATGGCTACCGGGTCGAATATGCGATCGACCTGGCTGTCGACGGCGGTGCGCTGCAGCAGGTGCTAGCCACCGCGTTCGATGGCAAGACGACCAGCAAGTACACGCGCACGCACCGCATTGAACTGCCGCGCGCGAAAACCGGCTGGACGATCCGCGTGCGCCGCATCACGCCCAACGCGAACAGCGGCACGATCGCCGACGTGACACGAATCGAATCGATCGCCGAGGTGATCGACGCCAAGCTGCGTTACCCGAATTCGGCGCTGATCGGCGTGCGCATCGATGCGCGCCAGTTCAGCAGCGTGCCTACCCGGTCGTATCACCTGCGCGGCCGTATCATCCGCGTGCCGAGCAACTATGACCCGCTCACCCGTACCTACACGGGGCTGTGGGATGGCACGTTCAAGGCGGCCTACAGCAACAACCCCGCCTGGGTGTTCTATGACATCGTGCTGCACAAGCGGTGCGGGCTGGGCGACCGCGTAAGCGCGGACATGGTCGACAAGTGGGCGCTGTACCAGATCGGCCAATACTGCGACGAGTTGGTGCCGGACGGGCGGGGCGGGCAGGAGCCCCGCTTTACCTGCAATTGCTACCTGCAACAGCGCAACGATGCCTACCCCGTCTTGCAGGACCTGGCCAGCGTGTTCCGCGGCATGGCTTACTGGGCGTCGAGCAACGTGGTCGCCGTGGCGGACATGCCGGCGTCCGCTTCGTACCTTTTCCACCCAGGCAACGTGGTCGATGGCCAGTTCACCTACGCCGGCAGCGCCAGGCGGGCCCGGAAGACGGTGGCGCTTGTCTCATGGAACGATCCGGGCGACCAGTACCGCGCCAAGGTCGAGCATGTCGAGGATGGCGACGGCATCGCGCGATACGGCATCCAGCAGACCGAGGTGACCGCGTTCGGCTGCACCTCCCAGGGCCAGGCGCATCGTGTAGGTCAGTGGATCCTGCTGACCAGTCGCCTGGAAACCGAGACGGTCTCATTCAAGGTCGGGCTCGACGCTGCAGTAGTCATGCCGGGCGCGATTATCGAGGTCGCGGACCCGGTGCGCGCGGGCCGGGCCAACGGTGGCCGCGTCCGCTCGGCCGATGGCCGGACGGTGGTGGTCGACCGGCCGGTGGTGGTCCGGGAAGGCGATACCCTGCTGCTGAACCTGCCGGACGGCACCGCGCAGCGGCGGACCATTTCCCGCGTCGACGGGCAGGGCCTGACCGTCTCGGCCGACTGGTCGCAGCCGGTGCAGGCGGAGGCGGTGTGGTCGGTCGAGAGCGCGGATCTGAAAACCCAGCTGTTCCGGGTGGTGTCGGTAACGGAAAGCGACGGCCTGACGTTCGACATCTCGGCGCTCGAGTACAACCAGTCGAAATTCTCGGCCATCGACAACGGCACGCGCATCGAGGCGCGCCCGGTGTCGGTGCTGCCGCCGTCGGTGCAGCCGGCGCCGACCGATGTGACGTTGGCCACGTACAGCGTTGTCGATCAGGGCATTGCCACCACGACGATGATGGTCGCGTGGCAGCAGGCCGCCAGCGCGGTCGCCTACACCGTCGAATGGCGGCGGGACAATGGCGAATGGGTGACGGCCGGCCGCACGGGCTCGCAGAGCCTCGAGGTGCGCAACATCTACGCCGGCACCTACGTTGCTCGGGTGCGCGCAATCAACGCGCTTGACGTGGCGTCGCTGCCGGCCTATTCGGCGGAGACCCGGCTCACCGGCAAAACCTCGCCGCCGCCGGTGGTGGGCACGCTGATCGCCACAGCCATCGTGTTCGGGATCCGGCTGGACTGGGCATTCCCGACCGGTCCGCTCGATGTGGAGCGGACCGAGCTCTGGTGGAGCAAAACGCCGGATCGCGCGTCGGCGACCAAGCTTGGCGATTTCGCGTTCCCCGCCAACACGCACACGCTGATGGGGCTGGCGGCCGGCGCGACGTTCTATTTCTGGGCTCGCTTGGTCGACAAATCCGGCAATGTCGGCGCGTGGTACCCGTCCGGCAATGGCGTGCTTGGCATGAGCAGCGACCAAGCCTCCGACATCCTCAGCTACATGAAAGGCCAGATTGGCAAAACGCAGCTCGCTGGTGACCTGCTGTCGGCGGTTGATTCGATTGATCCGCCGATGGCGGGCAGCGATGAGGATTTTGCCGGCGACGGCACCGTCTACGCCGGGATCGTGTCGACGCAGTCGGTGCTGGAGGAGGCCAACCGCGCGATCGCGCAGCAGGTGACGACCGTGCAGGCTACGGTCGCGCAGAGCAGTGCGGCGGTGCAGGTGGCGCAGCAGGCGGTCGCCGAGCAGGGTGGCCGGCTGGCGGCGATGTACACCATCAAGACGCAGATCGCTGCCAACGGCCGGACCTACCTGGCCGGGATCGGCGTCGGCGTCGAGAACGACAAGGGTGTCATCGAAAGCCAGGTGCTGATCGCTGCGGATCGATTCGCGGTGCTGCATCCGAACGGTGACAGCGTGTTGACGCCGTTCGTGATACAGGGTGGGCAGGTGTTCATGGATTCGGCGTTCATCGCTGACGGCACGATCACCAGCGCCAAGATCGGCGACTCGATCCAGTCGAGCAATTTCGTTGCGGGGCAGACTGGGTGGAGGCTCAGCAAGTCGGGCCTGTTCGAGAACAACGGCAACGGCGCCGGCGGCCGGCGCGTCGATACCAGCGCGCTCACGCAGATCTATGACAGCGCCGGCACCCTGCGGGTGCGCCTGGGGGTGTGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2d1a3cdf4b5c546322fd28be60ca360a7e8e8f29ab6a683945e93e56fb6f8953
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8375
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ralstonia phages Trotereau,A., Boyer,C. and Torres-Barcelo,C. 2021-03-08 — GenBank