Protein

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Genbank accession
YP_010843858.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MGRVITGSNEFVIRANNLAGQPMVDLVSSPDNKNFAINIDGNIISRFKNDVVTIDGSRWAAIRSHLYVDQWAYDAPVTLDMGNVPGASDYYPAFSQKSIMANVGFNTKVEFGTFRDNNTWGRGIIRVGTFGHQSDANKHGIFTFTIEGDFQSQRYVIAPHFLTGVSSSAYPNKAGITIGDNDTGIYWGGDGIVAHFANSIQVAVLDSTGFRTEDGRSLASNGDLNQANDAYSTYVRDIYIRSDIRVKSELRKFESPSETLKKMNGYLYLQKKGFKEDGSINWEQSSGLIAQEVQSVLPELISVDKDNPEGLLRLNYNGIIALNTSTINEHTDEISELKARIQKLEEIISALI
Physico‐chemical
properties
protein length:352 AA
molecular weight: 38898,93180 Da
isoelectric point:5,23671
aromaticity:0,09659
hydropathy:-0,31534

Domains

Domains [InterPro]
DC_1202
STR
2–352
DC_1202
IPR030392
CHP
242–341
IPR030392
IPR030392
CHP
242–300
IPR030392 Coil
YP_010843858.1
1 352
Architecture
STR
STR 2-352
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010843858.1
1 352
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0288
Central domain 11 209 200 0,2230
C-terminal 210 352 142 0,9574
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-352

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage KM16
[NCBI] 		2797303 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella paratyphi
[NCBI] 		54388 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010843858.1 [NCBI]
Genbank nucleotide accession
NC_070779 [NCBI]
CDS location
range 3 -> 1061
strand +
CDS
ATGGGGCGAGTTATTACTGGTAGTAATGAGTTTGTAATACGAGCAAATAACTTAGCCGGGCAGCCTATGGTTGATCTAGTTTCATCACCCGATAATAAGAACTTTGCTATTAATATTGACGGTAATATAATTTCTAGATTCAAAAACGATGTGGTTACTATTGATGGTTCTCGTTGGGCTGCAATAAGGTCTCATTTATACGTTGATCAATGGGCTTATGACGCTCCAGTAACTCTTGATATGGGAAATGTTCCGGGAGCTTCAGATTACTATCCTGCATTTTCACAAAAGTCAATTATGGCTAATGTCGGCTTTAATACTAAAGTTGAATTTGGTACTTTTAGAGATAATAATACATGGGGCCGAGGTATTATTCGTGTTGGTACATTTGGACATCAATCGGATGCTAATAAACACGGTATTTTTACTTTTACGATTGAAGGTGATTTTCAATCTCAACGATATGTTATTGCACCTCATTTCTTGACCGGAGTATCTTCATCAGCTTATCCTAATAAAGCAGGTATAACTATCGGGGATAACGACACTGGAATATACTGGGGTGGAGATGGGATTGTTGCACACTTTGCAAACTCTATCCAAGTTGCTGTATTAGATAGCACTGGATTCCGTACCGAAGATGGACGTAGTTTAGCTTCTAATGGCGATTTGAACCAAGCAAATGATGCTTACTCTACCTATGTTCGTGATATCTATATTCGTTCAGATATTCGTGTTAAGAGTGAACTTCGTAAATTTGAATCTCCTTCTGAAACTCTTAAGAAGATGAACGGATATTTGTATCTTCAGAAGAAAGGTTTCAAAGAAGATGGTTCTATTAATTGGGAACAGTCATCTGGTTTAATTGCTCAAGAAGTTCAATCTGTATTACCAGAATTAATTTCAGTAGATAAAGATAATCCGGAAGGATTACTTCGTCTGAATTATAACGGTATTATTGCATTAAACACCTCAACAATTAACGAACATACTGATGAGATTTCTGAATTAAAAGCTCGTATCCAGAAGCTTGAAGAAATCATTTCCGCATTAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2487df09012dff75d7c41851daaffcdee711954b1d8f5e65cec966658cf45a5d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6814
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Characterization, and Application of Salmonella paratyphi phage KM16 Against Salmonella paratyphi Biofilm Jiang,L. 2021-03-16 — GenBank