Protein

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Genbank accession
CAX65003.1 [GenBank]
Protein name
gp22 protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPGLFSLQLNETRPAMAEQYLHGAEVVEIDNGARPIRTAQSGVIGLVGTAPDADATAFPLNTPVLIAGSRREAAKLGAGGTLPQAIDGIFDQTGAVVVVIRVDEGVDSAATQSNVIGKVDADTEQYTGILALLSAENTVKVQPRILIAPGFSNQKAVADQLVSVADKLRGYVILDGPNTTDAAAITYRELFGSRRCEVVDPWYKVWDVETSAHIIQPPSARHAGVMAKVHNTLGFWWSNSNQEILGIDGLCRPVDFKLDDPTCRANLLNAKEVTTTIQQNGFRVWGDRTCSADSKWAFKNVVITNDMIADSLVRNHLWAVDRNITKTYVEDVTEGVNNYLRHLKNIGAIAGGECWVDPELNSPDQIQQGKVYFDYDFSAYAPAEHITFRSHMVNGYLTEVV
Physico‐chemical
properties
protein length:401 AA
molecular weight: 43696,73470 Da
isoelectric point:5,02453
aromaticity:0,07731
hydropathy:-0,12369

Domains

Domains [InterPro]
IPR054564
TAS
42–102
IPR054564 IPR052042
G3DSA:3.40.50.11780
STR
57–248
G3DSA:3.40.50.11780 IPR020287
IPR035089
TAS
127–290
IPR035089
CAX65003.1
1 401
Architecture
TAS
STR
TAS
TAS
TAS 42-56 | STR 57-248 | TAS 249-290 | TAS 292-391 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CAX65003.1
1 401
Domain Start End Length (AA) Confidence
N-terminal 1 384 384 0,8364
Central domain 385 390 7 0,0028
C-terminal 391 401 10 0,9904
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-384
Central
385-390
C-terminal
391-401

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP585
[NCBI] 		631719 Uroviricota > Caudoviricetes > Vhmlvirus >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CAX65003.1 [NCBI]
Genbank nucleotide accession
FN297812 [NCBI]
CDS location
range 14913 -> 16118
strand +
CDS
GTGCCGGGGCTTTTTAGTTTGCAACTCAACGAAACGAGACCCGCAATGGCTGAACAATACCTACACGGCGCAGAAGTCGTCGAAATTGATAATGGGGCCCGCCCCATTCGCACCGCTCAAAGTGGTGTGATTGGTTTGGTGGGGACGGCACCTGATGCCGATGCCACCGCCTTTCCTCTGAATACGCCGGTACTGATTGCCGGTAGCCGCCGAGAAGCGGCCAAGCTGGGCGCAGGTGGTACATTGCCACAGGCAATTGATGGCATTTTTGACCAGACTGGCGCAGTGGTGGTGGTGATTCGCGTGGATGAGGGCGTGGATAGCGCGGCCACTCAATCCAATGTGATCGGCAAAGTGGATGCCGACACCGAGCAGTACACCGGCATTCTGGCGCTGCTGTCTGCCGAGAACACCGTCAAGGTGCAGCCTCGCATTCTGATTGCCCCTGGTTTCTCAAACCAAAAGGCAGTCGCTGACCAGCTGGTGAGCGTAGCCGATAAACTGCGTGGCTATGTCATTCTGGATGGTCCAAACACTACCGATGCCGCCGCGATTACCTACCGTGAGCTGTTCGGCAGTCGCCGCTGTGAAGTGGTGGACCCTTGGTACAAGGTGTGGGATGTGGAGACCAGTGCTCATATTATCCAGCCACCTTCGGCTCGCCATGCTGGCGTGATGGCGAAAGTCCACAATACGCTGGGTTTCTGGTGGTCCAACTCGAACCAGGAAATCCTGGGCATTGATGGCCTGTGTCGTCCGGTGGACTTTAAGCTGGACGACCCGACCTGTCGCGCCAACCTGCTGAACGCGAAGGAAGTGACCACGACCATTCAGCAAAATGGTTTCCGTGTTTGGGGTGACCGCACTTGTTCTGCCGACTCTAAGTGGGCATTCAAGAACGTGGTCATTACCAACGACATGATCGCGGACAGTCTGGTTCGCAACCACCTGTGGGCAGTTGACCGCAACATCACCAAAACCTACGTCGAAGACGTGACGGAAGGGGTGAACAACTACCTGCGCCACCTCAAAAACATCGGTGCGATTGCCGGTGGTGAGTGCTGGGTGGACCCGGAGCTGAACAGCCCCGACCAAATTCAACAGGGTAAAGTCTACTTCGATTATGACTTTAGCGCCTACGCGCCTGCAGAGCACATCACGTTCCGCAGCCACATGGTTAACGGCTATCTGACGGAGGTTGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8e58a47167b2eb3603fd25362495b4299d8213300288027f2796c38304671fcb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9484
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The linear plasmid prophage Vp58.5 of Vibrio parahaemolyticus is closely related to the integrating phage VHML and constitutes a new incompatibility group of telomere phages Zabala,B., Hammerl,J.A., Espejo,R.T. and Hertwig,S. 2009 19587034 GenBank