Protein

View in Explore

Genbank accession

YP_001742077.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,85

Protein sequence

MIQYPSQLTGGFLIMTTNPTNKPIPSEDPRDLKYNAGKIDEFVASLAQQYTDRFGRAHYTIEGLKQLTLQQIYNLGWNLSGSFQDGGTVTSAGDILQDESTNIWYRWDNLKTLPKTVPPGSTPYSSGGTGNGKWMAVDVADVLRKDLAKPTGANLIGIHDTTVGEVLRQKVYIIAITGQSNAVGANKGGPNPANDKIVIWDGVTGGWGSSDYTKPPLSRSTPNGNNGNNNIALAFAHRLVDEHKAEKVFIIYDAVGGRPIEDWMANGVNSERYAAIKSKIEAALVSQEIVATGKTEIDFLVFAQGEENALTDTVTDYQAKLTTLDKQFRAESWMSDTTPMFIMGMSGLHMRYQVWQAQVDYCENYNRNCIYVNSAGLKTQYDVDNTGDYTHWLGESLWEHGYYRIWHALHELGVTHRQQLPPFYSRGTGLWKGDSIAISGFTSLVSSGSTTNDFPKNGPASSHAISWGYQCTASNYSLTGGYQNTMDTGASYSVSWGRGNTFSAAAQYSSSFGRENTINASYAFAAGRGHTIADQNCAALGAFSEYKTSLEDPVRFQVGTGTAAASPKTGFAVFQSGRALFSGNIDFRKDNKHSVGTPGFRASVIYAATANINTSDIATKKVRGDLTDAELRAWAKVPPTIYQILESLDEKGDNARLHAGLIAQDVAAAFESEGLDPRRYALFCEDETFEEVFEPQVQTVKRQKRGPGVIKETGIVDGVEVTIERTVDDALQYTLDGNELIPLMEETEETIMTPVRKSKGTRLGLRYIECLIFEAAYQRSIASRLEERLDKLENGD

Physico‐chemical properties

protein length:	796 AA
molecular weight:	87358,27520 Da
isoelectric point:	5,33919
aromaticity:	0,09799
hydropathy:	-0,41558

Domains

Domains [InterPro]

DC_1559
ATT
3–195

DC_1559 DC_0394

G3DSA:2.10.10.80
ATT
77–149

G3DSA:2.10.10.80 IPR036514 IPR011049 IPR036388

IPR040775
RBD
82–137

IPR040775 IPR005181 IPR036388

SSF52266
STR
172–445

SSF52266 IPR030392

SSF52266
STR
172–460

SSF52266 cd10144

IPR030392
CHP
615–792

IPR030392

YP_001742077.1

1 796

Architecture

ATT

STR

RBD

ATT 3-195 | STR 196-602 | RBD 603-795 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1559	ATT	DC_1559	3	195	Novel HMM	DC_1559	N-terminal	Low	Positional only	179 proteins / 179 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	77	149	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	82	137	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
IPR036514	STR	IPR036514	170	418	Merged direct domain	SGNH hydrolase superfamily	Central	Low	Positional only	180 proteins / 180 hits
IPR005181	ENZ	DC_0247	171	395	InterPro cluster	Sialate O-acetylesterase domain	Central	High	Text match	78 proteins / 79 hits
SSF52266	STR	SSF52266	172	445	Merged direct domain	SSF52266	Central	Low	Positional only	227 proteins / 227 hits
SSF52266	STR	SSF52266	172	460	Merged direct domain	SSF52266	Central	Low	Positional only	227 proteins / 227 hits
DC_0394	RBD	DC_0394	405	637	Novel HMM	DC_0394	C-terminal	Low	Positional only	49 proteins / 49 hits
IPR011049	STR	IPR011049	445	602	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR036388	RBD	IPR036388	600	795	Merged direct domain	Winged helix-like DNA-binding domain superfamily	C-terminal	Low	Positional only	96 proteins / 96 hits
IPR036388	RBD	IPR036388	603	795	Merged direct domain	Winged helix-like DNA-binding domain superfamily	C-terminal	Low	Positional only	96 proteins / 96 hits
IPR030392	CHP	DC_0088	615	674	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
cd10144	CHP	DC_0088	615	781	InterPro cluster	cd10144	C-terminal	High	Text match	3502 proteins / 3959 hits
IPR030392	CHP	DC_0088	615	792	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_001742077.1

1 796

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	336	336	0,5342
Central domain	337	535	200	0,6989
C-terminal	536	796	260	0,9839

Note: Constraints were applied during segmentation.
Fixed 25 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-336

Central
337-535

C-terminal
536-796

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage Vi II-E1 [NCBI]	424716	Uroviricota > Caudoviricetes > Macdonaldcampvirus >
Host	Salmonella enterica subsp. enterica serovar Typhi [NCBI]	90370	Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Genbank protein accession

YP_001742077.1 [NCBI]

Genbank nucleotide accession

NC_010495.1 [NCBI]

CDS location

range 29858 -> 32248
strand +

CDS

ATGATACAATATCCATCACAGTTAACTGGAGGATTTTTGATAATGACCACCAACCCGACCAATAAACCAATTCCGTCTGAAGACCCGCGAGACCTCAAATATAATGCGGGGAAAATTGATGAGTTCGTCGCGTCATTAGCTCAGCAATACACCGATCGTTTCGGTCGTGCCCACTACACGATTGAAGGGCTTAAACAGCTAACTTTGCAACAGATTTACAATCTTGGATGGAATCTTTCCGGGTCTTTTCAGGATGGCGGGACGGTTACGTCTGCTGGCGACATTCTACAGGATGAAAGCACGAATATTTGGTACAGGTGGGATAATTTAAAAACACTCCCAAAAACAGTCCCACCGGGGTCAACTCCATATTCTTCCGGAGGTACTGGAAATGGAAAATGGATGGCTGTTGATGTGGCTGATGTTCTCCGCAAGGACCTGGCTAAACCAACGGGAGCAAATTTAATTGGAATTCACGATACAACAGTAGGTGAGGTTCTGAGGCAAAAAGTTTACATCATCGCGATCACCGGCCAGTCAAATGCGGTAGGGGCAAACAAAGGTGGTCCAAATCCAGCCAACGATAAAATTGTTATCTGGGATGGCGTAACGGGGGGCTGGGGAAGCAGTGATTATACCAAACCACCATTGTCTCGCTCCACCCCAAACGGTAATAACGGCAACAACAATATCGCGCTGGCATTTGCACACCGTCTTGTTGATGAGCATAAAGCCGAAAAGGTGTTCATCATCTACGATGCTGTTGGCGGTCGTCCGATTGAGGACTGGATGGCAAACGGTGTCAATTCAGAGCGTTACGCTGCAATCAAAAGCAAAATCGAGGCCGCATTAGTCTCTCAGGAAATTGTCGCAACCGGTAAAACAGAAATTGATTTTCTTGTATTTGCACAGGGTGAAGAAAATGCCCTGACAGATACCGTAACGGATTATCAAGCAAAACTTACAACACTGGATAAACAATTTCGTGCAGAAAGCTGGATGTCTGATACTACACCGATGTTTATCATGGGGATGAGCGGATTACACATGCGCTACCAGGTATGGCAGGCACAGGTTGACTACTGCGAGAATTATAACCGAAACTGCATCTATGTGAATTCTGCCGGGCTAAAAACACAATATGACGTTGATAATACGGGAGATTATACTCACTGGCTGGGAGAGTCATTGTGGGAGCATGGCTATTATCGTATCTGGCATGCGCTGCATGAGTTGGGTGTTACGCACAGGCAACAGTTGCCACCCTTCTATTCCCGTGGGACTGGTCTCTGGAAAGGGGACAGTATTGCCATCAGCGGGTTTACCAGTCTGGTAAGTTCCGGTTCAACAACCAATGATTTTCCTAAGAACGGACCAGCCTCCTCGCATGCTATCAGTTGGGGGTATCAGTGTACAGCTTCCAACTATTCGCTGACTGGCGGCTACCAGAACACCATGGACACTGGAGCTAGCTACTCTGTTTCCTGGGGAAGGGGAAACACCTTCAGTGCAGCAGCGCAGTACTCATCTTCATTTGGACGTGAAAACACAATTAATGCGTCCTATGCATTCGCTGCTGGACGTGGGCATACAATCGCTGACCAGAACTGTGCGGCGCTGGGGGCATTTTCTGAATACAAAACGTCACTCGAAGATCCGGTGAGGTTTCAGGTGGGGACAGGAACAGCTGCCGCGTCACCAAAAACTGGTTTTGCCGTGTTTCAATCAGGACGCGCTCTGTTTTCAGGTAACATCGATTTCAGAAAGGACAACAAACACTCTGTTGGAACTCCCGGCTTCCGCGCATCGGTTATTTATGCTGCAACAGCAAATATCAACACATCAGATATTGCAACTAAAAAGGTGCGTGGAGATTTAACCGATGCTGAATTACGGGCATGGGCTAAGGTACCTCCGACAATTTACCAGATTCTTGAATCACTGGATGAAAAGGGCGATAACGCGCGGCTGCACGCAGGCCTGATTGCACAGGATGTTGCGGCAGCTTTTGAATCTGAAGGACTGGACCCGCGACGTTATGCTCTGTTCTGCGAAGACGAAACGTTTGAAGAGGTGTTCGAACCACAGGTTCAGACAGTCAAACGTCAGAAACGCGGCCCCGGCGTTATCAAAGAAACTGGCATTGTCGACGGGGTGGAAGTTACAATTGAGCGCACCGTAGATGACGCGCTCCAGTACACGCTGGATGGAAACGAACTCATCCCGCTGATGGAGGAGACAGAAGAAACAATAATGACTCCCGTTCGTAAATCAAAGGGTACTCGTCTTGGTTTGCGTTATATAGAGTGCCTTATTTTTGAGGCTGCGTATCAGCGTTCAATAGCCTCAAGGCTTGAAGAACGCCTTGATAAACTAGAGAATGGCGATTGA

Genome Context

Tertiary structure

PDB ID

f8e7b39fa5213f683edea75f94a4f0b2b876ec98b8a8765100319af5a1f8a4d9

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7859

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Molecular characterization of the Salmonella enterica serovar Typhi Vi-typing bacteriophage E1	Pickard,D., Thomson,N.R., Baker,S., Wain,J., Pardo,M., Goulding,D., Hamlin,N., Choudhary,J., Threfall,J. and Dougan,G.	2008	18192390	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature