Protein

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Genbank accession
QIG74921.1 [GenBank]
Protein name
WD40/YVTN repeat-like domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTIQFSEQTINGTVSGTVRDFAISPDGTLLLACTSVDTYLLKWNTSTKQWDIVTISGKAGAEPGTAPGFSYDNTYLFFQKNANLDQSGSNAYVRWQLVSGVWTETRNLAAATRMKAFKGLPNDQMLALYYDQMYIWTIASGGGGTNIGPFFTGASAQVPNDGALSPDTNHLAITRRNNGVLVYRRTPGTDTWNADTVNGGGSGAGNWRVQWIDNTHFLMSESEVANGLYLGTLTATNTWTITAVDTTFNSVASFVLDDGKTVGYYNSSAAAAPKVWDFSTGTMVSTTDFTGLPTNQTMVAARSRQTNGGNKTLALAPSTGGMRVFAMLNSATVPIVYSKFGIAATGDAQDGALGSLSYQKYTTSGNLNVPVGITGAYSFGGFKIAGLAGAFDPEYPETQPWHWKGVVGVENQAITFSEEVPTEPWLYSDLVYSKFAMDSNVSVIAYGNGALNYQKFETTAVSGTIEANSTIQYPTFGIAGNIFDYDEVHSDITYPFAQVHSTLNLLNEVNSAYVLPTFAVDGTVEFILASGDLVFPKFAVDVNAATSRATGSLLYAVYAVNADANVPVGVLANYTAPRFAIDGTVNVPIGINGSYTLPKFFVEAVGGITNAVNADALYQSFKLSGVVQPTHSVDASLLYSKYVIEAFIGPEQKGNADIVYPKFGTAFVVDNYYGVALDADLTLTFEGEAENTKRRKTVSVFEH
Physico‐chemical
properties
protein length:703 AA
molecular weight: 75269,00290 Da
isoelectric point:4,72977
aromaticity:0,11949
hydropathy:-0,02802

Domains

Domains [InterPro]
IPR015943
STR
5–242
IPR015943 DC_1393
IPR011044
ATT
9–295
IPR011044
QIG74921.1
1 703
Architecture
ATT
STR
ATT 5-295 | STR 325-703
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG74921.1
1 703
Domain Start End Length (AA) Confidence
N-terminal 1 77 77 0,1822
Central domain 78 692 616 0,3268
C-terminal 693 703 10 0,0835
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-77
Central
78-692
C-terminal
693-703

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_I42
[NCBI] 		2509736 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG74921.1 [NCBI]
Genbank nucleotide accession
MN988540 [NCBI]
CDS location
range 189436 -> 191547
strand +
CDS
ATGACCATTCAATTTTCCGAACAGACAATCAACGGGACTGTATCTGGCACGGTGCGCGATTTCGCGATCTCGCCGGACGGTACGCTCCTGCTTGCCTGTACTTCGGTGGATACCTATCTGTTGAAATGGAACACTAGCACCAAACAGTGGGACATTGTTACCATCTCCGGTAAAGCTGGAGCAGAACCCGGCACTGCGCCGGGTTTTTCCTATGACAACACCTACCTCTTCTTTCAGAAGAACGCCAATCTGGACCAGTCAGGTTCAAATGCCTACGTTCGTTGGCAGTTGGTAAGTGGTGTCTGGACTGAAACCAGAAACCTCGCCGCCGCAACGCGAATGAAAGCGTTCAAAGGTCTTCCAAACGACCAAATGCTCGCCCTGTATTACGACCAGATGTATATCTGGACGATTGCAAGCGGCGGGGGCGGCACAAACATTGGTCCGTTTTTTACCGGCGCTTCCGCGCAAGTCCCGAACGACGGCGCGCTGTCGCCTGATACGAACCATCTCGCCATCACGCGCCGCAACAACGGTGTGTTGGTATATCGCCGCACTCCCGGCACCGATACGTGGAATGCCGATACCGTCAACGGCGGCGGATCGGGCGCTGGTAACTGGCGCGTTCAATGGATCGATAACACGCACTTCCTCATGTCGGAATCGGAAGTCGCTAACGGTCTGTATCTCGGCACTCTTACCGCGACAAACACGTGGACTATTACCGCAGTAGACACCACGTTCAATTCCGTTGCTTCGTTCGTCTTGGATGATGGTAAGACTGTAGGTTACTACAACAGTTCTGCCGCCGCCGCGCCCAAGGTTTGGGATTTCAGCACTGGCACGATGGTTTCCACTACGGATTTCACCGGCCTGCCTACCAACCAGACAATGGTTGCCGCGCGCAGCCGCCAGACTAACGGTGGTAATAAGACTCTCGCTCTTGCACCATCGACCGGCGGCATGCGCGTCTTCGCCATGCTGAATTCGGCCACGGTTCCAATCGTCTATTCGAAGTTCGGCATTGCCGCGACGGGGGATGCGCAGGATGGCGCTCTTGGTTCTCTGTCTTACCAAAAATACACGACTTCTGGAAATCTCAACGTCCCTGTCGGTATTACCGGCGCATACTCGTTCGGCGGCTTCAAAATAGCTGGCCTTGCGGGCGCGTTTGATCCGGAATATCCGGAGACTCAGCCGTGGCACTGGAAAGGCGTGGTAGGTGTCGAGAACCAAGCCATAACATTCAGCGAAGAAGTTCCTACCGAACCATGGCTGTACAGCGATCTCGTCTATAGCAAGTTCGCCATGGACAGCAACGTTAGCGTAATTGCCTACGGCAACGGCGCGTTGAATTACCAAAAATTCGAAACGACTGCGGTTAGCGGCACAATCGAAGCTAACAGCACTATCCAGTATCCGACGTTCGGTATCGCCGGTAACATATTCGACTACGACGAAGTGCACTCGGATATCACCTATCCGTTTGCGCAAGTCCACTCGACCCTGAATTTGCTGAACGAAGTAAACAGCGCTTACGTTCTACCAACGTTTGCTGTTGACGGTACGGTCGAATTCATCCTTGCCAGCGGCGATCTCGTTTTCCCGAAGTTCGCTGTGGATGTGAATGCAGCTACTAGCCGCGCAACCGGTTCGTTGCTGTATGCGGTCTACGCCGTGAATGCGGATGCTAACGTTCCGGTCGGCGTTCTAGCCAATTACACGGCACCACGTTTCGCTATCGATGGCACGGTCAACGTTCCTATTGGTATAAACGGAAGCTACACGCTGCCGAAGTTCTTCGTAGAGGCTGTCGGAGGAATTACCAATGCCGTCAACGCCGACGCGCTGTATCAAAGCTTCAAGTTGTCTGGCGTCGTTCAACCAACGCACTCCGTCGACGCGAGCTTGCTATACAGCAAGTACGTCATCGAAGCGTTCATTGGTCCCGAGCAGAAAGGCAATGCTGATATCGTATATCCCAAATTCGGAACGGCCTTCGTGGTAGATAACTACTACGGTGTCGCGCTAGACGCTGATCTCACTCTTACTTTTGAGGGTGAAGCGGAAAACACGAAACGCCGCAAAACGGTCAGCGTGTTTGAGCATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7527485f846338080bf4a8e3145d319a7e9c6f81c61b93cb30427791488074b9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4951
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank