Protein

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Genbank accession
YP_009813534.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MIYLSVNAETGEIYGRVREETPTSIEVDAELFGRYLGDPSAFIYYPDRRTIDVRPDYEAPKLLSLPTDVLENYQTRLQEEVYVPELDVHVNISGAFGRAFIVALALAPYKPQKVLVYDNGAYSAIEIDLSNLPYFAEAYSKHFADILETPDE
Physico‐chemical
properties
protein length:152 AA
molecular weight: 17233,10570 Da
isoelectric point:4,39760
aromaticity:0,12500
hydropathy:-0,19276

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA11
[NCBI] 		2382310 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009813534.1 [NCBI]
Genbank nucleotide accession
NC_048077.1 [NCBI]
CDS location
range 56533 -> 56991
strand -
CDS
ATGATTTATCTAAGCGTGAATGCGGAGACAGGAGAAATTTACGGGCGCGTGCGCGAAGAAACGCCTACCTCCATTGAAGTTGATGCTGAATTGTTTGGGCGATATCTTGGCGATCCTTCTGCTTTTATTTATTATCCGGATCGTCGTACCATTGATGTACGTCCTGACTATGAAGCGCCGAAACTTCTGTCTCTCCCTACCGATGTTTTGGAAAACTATCAAACGCGTCTGCAAGAAGAAGTTTATGTGCCTGAACTTGATGTGCATGTGAATATCTCCGGCGCGTTTGGTCGTGCGTTTATTGTTGCGCTGGCGCTCGCCCCATATAAGCCGCAAAAAGTTTTAGTTTACGATAATGGCGCTTACAGTGCGATTGAAATTGATCTTTCAAATCTGCCGTATTTTGCCGAAGCGTATTCGAAACATTTTGCTGATATTCTGGAGACGCCTGATGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
97f030951e576e3f6be8b8955cc7427f880ca7da3efcc0f8abec524faac68b35
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6705
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo bacteriophages are represented within an increasing diversity of environmental viruses infecting the emerging phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank