Protein

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Genbank accession
AVO23929.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,81
Protein sequence
MADLPEQPAGWPGIPMISTSDPVLGGQDGPANRQAAALISRLQTVRDLVDAATAALATVTPQVDQHVQTINALQASVSSVQTSVQTVSGVATAAQAAASVADAKAVAAQTAATAKAVRIDLGTVTVTYTASTALVAGARSIAVACTGAQVGDAIFVAATNAIPDGYAVGAAQCLVADTIRVSVIYPALSIGNSFSISLRVFALR
Physico‐chemical
properties
protein length:204 AA
molecular weight: 20327,84320 Da
isoelectric point:5,09274
aromaticity:0,03431
hydropathy:0,51029

Domains

Domains [InterPro]
DC_1388
STR
1–202
DC_1388
AVO23929.1
1 204
Architecture
STR
STR 1-202 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XPP4
[NCBI] 		2099856 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVO23929.1 [NCBI]
Genbank nucleotide accession
MG944230 [NCBI]
CDS location
range 38011 -> 38625
strand +
CDS
ATGGCCGATCTTCCCGAACAACCTGCCGGCTGGCCCGGTATCCCGATGATATCGACGTCCGACCCGGTCCTAGGCGGTCAAGACGGGCCCGCCAATCGACAAGCTGCGGCGCTGATCTCGCGCTTACAGACGGTACGCGATCTCGTCGACGCAGCCACCGCCGCGCTCGCAACGGTGACCCCGCAGGTCGACCAGCACGTCCAGACGATCAACGCTCTGCAAGCCTCTGTCAGTTCCGTACAGACGTCCGTGCAGACGGTCAGTGGGGTTGCCACGGCGGCCCAGGCCGCGGCCTCTGTGGCCGACGCTAAGGCCGTTGCCGCGCAAACGGCAGCCACGGCAAAGGCGGTGCGCATCGACCTGGGCACTGTCACGGTCACCTACACTGCGAGCACCGCACTGGTGGCTGGCGCACGTTCGATTGCGGTCGCGTGCACCGGGGCTCAGGTCGGCGACGCGATCTTCGTCGCGGCGACCAACGCGATACCGGACGGCTACGCGGTCGGCGCGGCGCAATGTCTGGTCGCCGACACGATCCGCGTATCGGTGATCTACCCTGCGCTGAGCATCGGCAATAGCTTCAGCATCTCCTTGCGTGTCTTTGCGCTGCGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
49ae0148dd60b4dea34f0817d90789f1929dcad4bb27e032ddd0283dace05309
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8688
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and comparative genomics of Xanthomonas oryzae pv. oryzae bacteriophages Varga,I., Molnar,J., Gazdag,A., Szucs,D., Doffkay,Z., Valappil,S.K., Papp,S., Pinter,R., Vera Cruz,C.M., Ricardo,O., Vizi,T., Schneider,G., Rakhely,G. and Kovacs,T. 2019-07-03 — GenBank