Protein

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Genbank accession
XYL02078.1 [GenBank]
Protein name
tail fiber N-terminal domain containing protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,76
Protein sequence
MSSEGLPVDGVVSVGVDLGPRSTEQATDVAKSSLSADSAADSADAAFKFSREAKAVSVVATDAAERAEVALENTQNIADANTYYTTPEDPDGTITGLAGTPNGKSFRVGLGPGKGFKTYVNNNGVALEISESPSADQVSELYGKIKTVDLELTEESSYPVAGKNGEAHIYVENKKIGGSGLSDSLHKDIQEKLGGSILSSQEGELIDENVWPALVRNGKVYGHFDGRRLSVYDIIIENPDAFDLSQAKSFAPLITNGRTLFRWRAIRAMLDRLVNTRGKILGIGDSYMDFATILQILANWLYGEHGKSADGWASVCGPVSGRDMYLNDMTFTFSGFTAWSIGGPDNDTAPYGCGIDGYCIYTSGTDATAKLSNFDGTRITIYHRDSGSFRYRIDGGAWVTVTTTGAGGKSKTEITGLTTGLHSIDIDTTVNTDVVAIYSFYAKNWDKAGIEVHKCGHAGARGIQYLNKISPHIPYFAKEINPDLVIIILGTNDYRYPTSNVSNFIAGIHSIVSAFRSVSPDVGIVFIAPPDTKGIPANPAAPLISFVNAARAYSAANNIEFVDWHGLTPDWETANKLGQFADDLHVNDNGATGLVNGVKDTLI
Physico‐chemical
properties
protein length:603 AA
molecular weight: 64422,97640 Da
isoelectric point:4,96678
aromaticity:0,08955
hydropathy:-0,18308

Domains

Domains [InterPro]
DC_1164
ATT
40–156
DC_1164 IPR036514
G3DSA:2.60.120.1360
Unmapped
309–448
G3DSA:2.60.120.1360 IPR013830
cd00229
ENZ
429–591
cd00229
SSF52266
STR
441–602
SSF52266
IPR051532
Unmapped
444–590
IPR051532
XYL02078.1
1 603
Architecture
ATT
STR
ATT 40-156 | STR 279-602 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYL02078.1
1 603
Domain Start End Length (AA) Confidence
N-terminal 1 273 273 0,9246
Central domain 274 472 200 0,5296
C-terminal 473 603 130 0,4951
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-273
Central
274-472
C-terminal
473-603

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PbrM1EGY
[NCBI] 		3387282 Viruses >
Host Pectobacterium brasiliense
[NCBI] 		180957 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYL02078.1 [NCBI]
Genbank nucleotide accession
PQ676537.1 [NCBI]
CDS location
range 14596 -> 16407
strand -
CDS
ATGTCAAGTGAAGGATTGCCAGTCGATGGTGTTGTCAGCGTTGGTGTTGACCTTGGTCCTCGCAGTACAGAGCAAGCTACAGACGTGGCTAAAAGCAGTTTATCGGCCGACAGCGCTGCTGATTCTGCTGATGCCGCGTTCAAGTTTAGCCGTGAAGCCAAAGCCGTATCTGTGGTAGCCACTGATGCAGCAGAGCGAGCAGAAGTGGCATTAGAAAACACCCAAAACATTGCTGACGCCAACACGTACTACACTACCCCAGAAGACCCTGACGGGACGATTACAGGGCTTGCAGGAACGCCAAATGGCAAATCATTTCGAGTTGGACTGGGGCCGGGAAAGGGCTTTAAGACATATGTAAATAATAACGGTGTTGCTTTGGAAATTTCTGAAAGCCCATCAGCAGACCAAGTATCAGAATTATATGGAAAGATCAAAACTGTTGATCTGGAACTAACCGAGGAATCTTCATATCCCGTTGCCGGGAAAAATGGAGAGGCTCATATATATGTTGAAAATAAAAAAATTGGTGGGAGTGGGCTGAGTGACTCACTTCATAAGGATATCCAAGAGAAGTTAGGAGGAAGCATTCTTTCTTCTCAGGAAGGGGAGTTGATTGATGAGAATGTTTGGCCTGCATTAGTCAGGAATGGCAAGGTTTATGGTCATTTTGATGGTAGGCGACTGAGTGTTTACGACATTATCATAGAAAACCCTGATGCCTTCGACTTGTCTCAAGCAAAATCATTTGCGCCACTAATTACTAATGGTCGAACTCTGTTTCGCTGGCGAGCAATACGAGCGATGCTTGATAGACTGGTTAATACCCGTGGGAAAATATTAGGTATTGGCGATAGCTATATGGATTTTGCGACCATATTGCAGATATTGGCAAATTGGTTGTATGGCGAACATGGCAAATCAGCTGATGGCTGGGCAAGCGTCTGCGGGCCAGTTAGTGGACGTGATATGTATCTAAACGATATGACATTCACATTTTCCGGGTTTACGGCATGGAGCATCGGTGGCCCCGACAATGACACTGCACCATACGGATGTGGAATTGATGGGTACTGTATTTACACATCGGGAACTGATGCAACGGCGAAATTAAGTAATTTCGACGGCACGCGTATTACTATTTATCACCGCGACTCAGGCAGTTTCCGCTACCGTATTGACGGCGGAGCCTGGGTAACAGTAACGACTACCGGAGCGGGAGGGAAATCAAAAACAGAGATAACGGGACTTACTACTGGGCTTCATTCTATTGATATAGACACAACAGTTAATACTGATGTTGTAGCCATCTATTCATTCTATGCCAAAAACTGGGATAAGGCGGGAATTGAAGTTCACAAGTGCGGTCATGCAGGGGCAAGGGGTATTCAGTATCTAAACAAAATCAGCCCGCATATTCCCTATTTTGCTAAAGAAATAAATCCCGACTTGGTTATTATTATCTTGGGGACGAATGACTATCGATACCCAACGAGTAATGTTTCCAACTTTATTGCAGGTATCCATTCAATTGTTTCTGCTTTTCGTTCTGTATCGCCAGATGTAGGAATTGTATTTATTGCTCCGCCCGATACAAAAGGGATCCCGGCTAATCCTGCAGCCCCCTTAATTTCATTTGTTAATGCTGCAAGGGCATATAGTGCGGCAAACAATATTGAGTTTGTTGACTGGCATGGTCTGACGCCTGATTGGGAAACGGCAAATAAGCTTGGTCAGTTTGCTGATGATTTACATGTTAATGACAACGGTGCTACTGGGTTGGTCAATGGCGTGAAAGATACTTTAATTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e9480f72f176b60b7a9b1cc0b87c3a338763096720784b831313bb124e3b5068
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7988
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel Pectobacterium brasiliense-infecting phage from Egypt with biocontrol potential against soft rot in vegetables Elhalag,K.M., Ahmad,A.A., Elsharkawy,M.M., Huang,Q. and Naser-Eldin,M.A. 2025 41078524 GenBank