Protein

View in Explore
Genbank accession
ULR75129.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,50
TF
Evidence RBPdetect2
Probability 0,83
Protein sequence
MALKLANNAVSRLAAAVAANATSISLTPGDGAKFPTLGAGDWFPLTVVKGDGSLEVMRATARSGDTLTVSRAQESTAALAFAAGDRVELRFTAASAMSFLPLTGGIVNGSVAISGGNLSVTDQTGNIELGSMTAAGTPFIDFHSSGTGNDYDVRLIAVGGAAGAGQGNLDFYGQAFTCMNGIVRLGNSRGIYFKRTDGNYHIAMQLTSDSGNNTDIINCDGGGRIRFINDAYNAELGWFNNGGDFWVRGNIQGFSDRRVKSNIKRIKGAMAKVRALVGVTFTRRRSKDKTRHMGFIAQDVEPIVPEVVRTDEKGMKSIAYANLAALLAEALKEVEAEVKNELKKLGKRIAKLEAKQ
Physico‐chemical
properties
protein length:356 AA
molecular weight: 37665,29820 Da
isoelectric point:9,44702
aromaticity:0,07022
hydropathy:-0,11320

Domains

Domains [InterPro]
DC_1952
STR
1–350
DC_1952
IPR030392
CHP
255–309
IPR030392 Coil
IPR030392
CHP
255–349
IPR030392
ULR75129.1
1 356
Architecture
STR
STR 1-350 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ULR75129.1
1 356
Domain Start End Length (AA) Confidence
N-terminal 1 104 104 0,8459
Central domain 105 303 200 0,0708
C-terminal 304 356 52 0,9980
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-104
Central
105-303
C-terminal
304-356

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage JC1
[NCBI] 		2914166 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Burkholderia cenocepacia
[NCBI] 		95486 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ULR75129.1 [NCBI]
Genbank nucleotide accession
OM283127.1 [NCBI]
CDS location
range 34744 -> 35814
strand +
CDS
ATGGCACTGAAACTCGCAAACAATGCGGTCAGCCGACTTGCCGCCGCCGTCGCGGCGAACGCGACGAGCATCTCGCTCACGCCGGGCGATGGCGCGAAGTTCCCGACGCTGGGTGCCGGCGACTGGTTCCCGCTTACTGTGGTCAAGGGCGATGGTTCCCTCGAGGTCATGCGAGCGACCGCGCGATCAGGCGACACGCTGACTGTCTCGCGCGCGCAAGAGAGCACGGCAGCGCTGGCGTTTGCCGCCGGCGATCGTGTCGAGCTTCGGTTTACCGCAGCGTCAGCGATGTCGTTCCTGCCGCTCACTGGCGGCATCGTGAACGGCAGCGTCGCAATCTCTGGCGGCAATCTCTCGGTAACCGACCAGACGGGCAACATCGAGCTGGGAAGCATGACCGCTGCTGGCACCCCGTTCATCGACTTCCACTCGTCCGGCACCGGCAACGACTACGACGTTCGGCTCATTGCTGTCGGAGGCGCCGCGGGCGCCGGGCAAGGCAATCTCGACTTTTACGGTCAGGCGTTCACTTGCATGAACGGCATTGTGCGGCTTGGCAATTCGCGCGGCATTTACTTCAAGCGAACGGACGGCAATTACCACATTGCAATGCAGCTCACGTCCGACAGCGGTAACAACACAGACATCATTAATTGTGATGGTGGTGGCCGAATTCGCTTCATCAACGACGCCTACAATGCAGAGCTCGGATGGTTCAATAACGGTGGCGATTTCTGGGTGCGCGGCAACATCCAAGGCTTTTCCGACCGCCGCGTGAAGTCCAACATCAAGCGCATCAAGGGCGCGATGGCGAAGGTGCGCGCGCTGGTCGGCGTGACGTTCACGCGTCGCCGCTCGAAGGACAAGACGCGGCACATGGGCTTCATCGCGCAAGACGTCGAACCGATCGTGCCCGAGGTCGTGCGCACCGACGAGAAGGGGATGAAGTCGATCGCCTATGCGAATCTGGCGGCGCTGCTCGCTGAGGCTCTGAAGGAAGTGGAGGCTGAGGTAAAAAACGAGCTGAAGAAGCTCGGCAAGCGCATCGCGAAACTGGAGGCAAAGCAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1b1095566edda587e47992d0265bd71e054e9a7bfd3271c8d5a6a2f2eeaa6571
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8392
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of a broad host range Bcep22-like podovirus JC1 Davis,C.M., Cole,J. and Dennis,J. — — GenBank