Protein

View in Explore
Genbank accession
YP_010078173.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MTDRVTTWPGAIPQELDIMRNGKYAMMGIAKLAAAMLGTSTVVNGLTASPTSPAGLTINVGPGEIYSLVNVDATAQSSLAADTTHSIMKSGILMDAVNLSCPAPGTVGQSINYLIQATYQDQDTDLTALPYYNASNPTQAWSGPNNSGTAQATTRKGIVVLSAKAGVAATTGSQTTPAADSGYTGLWVVTVANGQTTITAPNIVQATNAPILPSDLLHAIQASSLINGADTGAANACVVSYSPAIAALKDGMVLWFKAAAANTSATTLNVNGLGAYPIVGGSHSALQGGEIIANGKCQVVWNATLSSFVLIECTGAAVQVAPATQSKHALQMGQVAGVVGSARNLAMSVTAASASATMTADEIIVESALGGLRYCLPSFNKTINLATNGAGGMDVGSAPNSGFVALYAIYNPATGTSALLAANATSAAVPNTYGGVLPSGYLASALVSVWPTNGSGQFVVGYQIDREVDLVATLQVNTTTQQASPTSLAVSGGVPPNAKSVSGTLQVSTTSSSALASGVSGSPLTLNQAINSVQNANLLQTSYANIKLVAPQTLYYQCTAGIGTMTFQLTTSGYRF
Physico‐chemical
properties
protein length:576 AA
molecular weight: 58123,89640 Da
isoelectric point:5,52455
aromaticity:0,05556
hydropathy:0,24653

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010078173.1
1 576
Domain Start End Length (AA) Confidence
N-terminal 1 448 448 0,8633
Central domain 449 565 118 0,0007
C-terminal 566 576 10 0,9829
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-448
Central
449-565
C-terminal
566-576

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage Raharianne
[NCBI] 		2759715 Uroviricota > Caudoviricetes > Rahariannevirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010078173.1 [NCBI]
Genbank nucleotide accession
NC_054955 [NCBI]
CDS location
range 31184 -> 32914
strand +
CDS
ATGACTGATCGCGTCACAACGTGGCCGGGAGCCATCCCCCAAGAGCTTGACATCATGCGCAACGGGAAGTACGCCATGATGGGCATTGCCAAGCTCGCTGCGGCGATGCTGGGCACGTCAACGGTGGTTAATGGGTTGACCGCGAGCCCAACATCGCCCGCAGGGCTGACCATCAACGTTGGACCCGGCGAGATTTACTCTCTGGTCAACGTCGATGCCACGGCTCAGTCATCGCTTGCTGCCGACACAACGCATAGCATCATGAAAAGCGGCATTCTGATGGATGCCGTGAACCTGTCGTGCCCGGCGCCGGGTACTGTGGGCCAGTCGATCAACTACCTGATTCAGGCCACATACCAAGATCAGGACACCGACCTGACTGCGCTGCCGTACTACAACGCCAGCAACCCGACGCAGGCATGGAGCGGCCCGAACAACAGCGGCACGGCACAGGCGACGACTCGCAAGGGCATTGTCGTTCTGTCGGCCAAGGCTGGCGTAGCGGCTACCACTGGCAGCCAGACCACCCCAGCCGCCGATTCCGGCTATACCGGGCTGTGGGTGGTGACCGTCGCCAATGGTCAGACGACCATCACCGCGCCGAACATCGTTCAAGCGACGAACGCGCCGATCCTGCCGTCGGACCTCCTGCACGCAATTCAGGCGAGCAGCCTGATCAATGGCGCCGACACTGGAGCGGCGAACGCCTGCGTCGTCAGCTATAGCCCGGCCATCGCCGCGCTGAAAGACGGCATGGTGCTGTGGTTCAAAGCAGCTGCCGCAAACACCAGCGCCACCACCCTCAACGTCAACGGTCTCGGTGCCTATCCCATCGTCGGCGGAAGCCATAGCGCGCTTCAGGGTGGCGAGATCATCGCCAACGGCAAATGCCAGGTGGTTTGGAATGCGACGCTCAGCTCGTTTGTGCTGATTGAGTGTACGGGAGCGGCGGTACAAGTCGCTCCCGCCACGCAGAGCAAGCATGCTCTGCAGATGGGGCAGGTGGCTGGCGTTGTGGGGTCGGCGCGCAATCTTGCGATGAGCGTTACAGCTGCATCTGCTTCGGCCACCATGACAGCCGATGAGATCATCGTCGAATCGGCTCTGGGCGGCCTGCGCTACTGCCTGCCATCATTCAATAAGACCATCAACCTAGCCACGAATGGCGCGGGCGGGATGGACGTCGGCAGCGCGCCTAACAGTGGCTTCGTCGCACTTTACGCCATCTACAACCCGGCGACTGGCACAAGTGCTCTGCTTGCGGCCAACGCAACGTCCGCAGCAGTGCCGAACACTTATGGAGGGGTGCTTCCTTCCGGCTACCTCGCGTCTGCACTGGTTAGCGTGTGGCCGACGAATGGCAGTGGGCAGTTTGTCGTTGGTTATCAGATTGACCGCGAGGTTGACCTAGTTGCAACCTTGCAGGTCAACACGACGACACAGCAGGCCTCCCCAACGTCGCTGGCTGTGTCTGGAGGTGTCCCGCCAAATGCAAAATCCGTCTCGGGAACGTTGCAAGTATCGACAACCTCTTCGAGCGCATTGGCGTCTGGCGTTTCGGGCTCGCCTTTGACGCTAAATCAGGCGATCAACTCTGTCCAAAACGCTAACTTGCTGCAGACCTCTTACGCCAACATAAAATTGGTTGCCCCGCAGACGCTCTATTACCAATGCACTGCAGGGATTGGGACTATGACTTTCCAACTGACCACTTCAGGCTATAGGTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5c0fceddcefc6254bb2d52c10a70974fbab7259041d52b2469013fbf57b6e1ab
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8877
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ralstonia phages Trotereau,A., Boyer,C. and Torres-Barcelo,C. 2021-03-08 — GenBank