Protein

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Genbank accession
UWD50689.1 [GenBank]
Protein name
BppU family phage baseplate upper protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,97
Protein sequence
MRDSIYIIDINKSLYQIATFKQYDNDIDFKIKLVENGVNADLTGYTVQAFFKDSKNKTYQRNCTTQDSLIITKLDNNILKTAGQTTAEIVLYKNEQVVATYPITFNVVEGINRNEELKNTPDWDIIKEVINIKDTIDGKIKEIDEAIKRIPTKEELKGDKGDKGDKGDMGAGLTLKGSFDTIDKLPTNAEEGDAYLIQGDLYVWDGTTWVDAGNIKGEKGEKGDKGDRGEKGDQGDAGASIKIKGVLNSTDELPANAEVGDAYSINGFLYVFGTEWVNIGNVKGEKGDPGAKGEKGDPGEPGQPGEPGTKGEKGDPGEPGQPGEPGAKGEKGDPGEPGADGTQIESASQVPYTNDAVASVTNVKEALDDLFTELKGSKEILSNTISEIKGVL
Physico‐chemical
properties
protein length:392 AA
molecular weight: 42164,19950 Da
isoelectric point:4,54498
aromaticity:0,06378
hydropathy:-0,68546

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
6–113
G3DSA:2.60.40.3350 PTHR24637
IPR018913
ATT
14–131
IPR018913 DC_1340
DC_1065
STR
110–239
DC_1065 IPR008160
G3DSA:1.20.5.320
STR
311–365
G3DSA:1.20.5.320
UWD50689.1
1 392
Architecture
ATT
STR
ATT 6-131 | STR 132-365 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridioides phage Hain-Saunders-2022a
[NCBI] 		2998861 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridioides difficile
[NCBI] 		1496 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Peptostreptococcales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UWD50689.1 [NCBI]
Genbank nucleotide accession
CP103806 [NCBI]
CDS location
range 28209 -> 29387
strand -
CDS
TTGAGAGATTCAATTTATATTATAGATATTAATAAAAGCTTATATCAGATTGCAACATTTAAGCAGTATGACAATGACATAGATTTTAAGATTAAATTAGTTGAAAATGGTGTAAATGCAGATTTAACAGGTTATACAGTCCAGGCGTTTTTTAAAGACTCAAAAAATAAAACATATCAAAGAAATTGCACTACACAAGATTCTTTAATAATAACAAAATTAGATAATAACATATTAAAAACAGCTGGGCAAACTACAGCTGAAATTGTTCTATATAAAAACGAGCAAGTTGTTGCAACATATCCAATTACTTTTAATGTTGTTGAAGGGATAAACAGAAATGAAGAATTGAAAAATACACCCGACTGGGACATTATAAAAGAAGTAATTAATATAAAGGATACAATAGACGGCAAAATTAAAGAAATAGATGAAGCAATTAAAAGAATACCAACAAAAGAAGAATTAAAAGGCGATAAAGGCGACAAGGGTGATAAGGGCGATATGGGCGCAGGGCTAACTCTAAAAGGGTCTTTTGATACTATTGACAAACTCCCAACAAATGCAGAAGAAGGCGACGCTTACCTTATACAAGGCGACCTGTACGTTTGGGATGGAACAACTTGGGTTGATGCTGGGAATATAAAAGGAGAAAAAGGCGAAAAAGGCGATAAGGGCGACCGAGGCGAAAAAGGTGACCAGGGTGACGCTGGGGCAAGTATAAAAATAAAAGGTGTCTTAAATAGTACTGATGAACTACCAGCAAATGCAGAAGTTGGGGACGCTTATAGCATAAATGGTTTTTTGTATGTATTTGGAACAGAGTGGGTCAATATAGGAAATGTCAAAGGGGAAAAGGGCGACCCTGGAGCTAAAGGAGAAAAAGGTGACCCTGGAGAGCCTGGGCAACCTGGAGAACCTGGTACTAAAGGAGAAAAAGGTGACCCTGGAGAGCCTGGGCAACCTGGAGAACCTGGCGCTAAAGGAGAAAAAGGTGACCCTGGAGAGCCTGGCGCAGATGGAACACAAATAGAAAGTGCAAGTCAAGTTCCTTATACAAATGATGCTGTTGCAAGTGTTACAAATGTAAAGGAAGCATTAGACGATTTATTTACAGAGTTAAAAGGAAGTAAAGAAATATTATCAAATACGATAAGTGAAATAAAAGGAGTTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0eba865eb3fe3539d711c8a6cba25b8bd8d9b95e1ca78a8269b1c18891708029
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8036
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
HGP14 Hain-Saunders,N.M.R., Knight,D.R. and Shivaperumal,N. — — GenBank