Protein

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Genbank accession
BDR25880.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MPYTIKRYSSVNGGSSKPNKTVNDIQIDNTYSSIGLIGSYNESYKSQFFQNMLWKMENFSHTIAPLNPIEGQLWFNPDEKSVKVYISNDKPTSVSSDWKNLGSTILNELTDHESRTGINDPHETTKEQVGLGNVPNVYTFNKTLNLADVLDASICRSNLEVYGTSETYNKTTVNNLFMTKGGTVNNTDRLDGLTSADFVLVDNPVVYRTFDTTSIITNTALTYNNSKGSIVVNTGAGNIELLSGIRSDGRIASANDTGAMLSFINDNSDPMVTMVVFNRATANNQTAQPVRSYRFTKTNLIIDYDTNPSEMYHTGRIPSNAAVGSLPLNGKAVNTLLLNGMYQSSSPNDNAVALRDGAGDVHVRHIQVSNPDENIETGNLILFRNSNTSDNYVRRANVSSFQSWFRANEPKGVVKAWIQFNGITGSTYKSHNCTLTKLGTGKYRIYYNSFSTPAAGSVVPFVGVTSDGQISTGMAAGTGRLSYNSSLVYLRSTTYTDLEFFRTYNINYNNYSLDSFTNVYADANNITFTWFF
Physico‐chemical
properties
protein length:532 AA
molecular weight: 58750,38950 Da
isoelectric point:6,19422
aromaticity:0,10526
hydropathy:-0,40301

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDR25880.1
1 532
Domain Start End Length (AA) Confidence
N-terminal 1 207 207 0,9490
Central domain 208 406 200 0,2023
C-terminal 407 532 125 0,9932
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-207
Central
208-406
C-terminal
407-532

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage sp. 30-2
[NCBI] 		2972142 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDR25880.1 [NCBI]
Genbank nucleotide accession
LC727697.1 [NCBI]
CDS location
range 215063 -> 216661
strand +
CDS
ATGCCTTACACTATTAAACGTTATTCATCTGTCAACGGCGGCTCTTCTAAACCAAATAAAACCGTTAACGATATACAAATAGACAATACGTACTCTTCTATTGGACTAATAGGATCGTATAATGAATCTTACAAAAGTCAGTTCTTCCAGAATATGCTATGGAAGATGGAAAATTTTAGTCACACTATTGCTCCGTTAAATCCGATAGAAGGTCAATTATGGTTTAATCCAGATGAAAAAAGTGTTAAAGTTTACATAAGTAATGATAAACCTACGTCTGTTTCTTCCGATTGGAAAAATCTAGGATCTACTATTTTAAATGAACTAACAGATCACGAATCAAGAACAGGCATTAACGATCCCCACGAGACAACAAAAGAACAAGTGGGATTGGGAAATGTTCCTAATGTTTACACATTCAATAAAACATTAAATCTTGCAGATGTATTAGATGCATCTATATGCAGATCTAATTTAGAAGTATACGGGACTTCAGAAACTTACAATAAAACTACTGTAAACAATCTTTTTATGACAAAAGGTGGTACAGTAAATAATACTGACAGATTAGATGGCTTAACTAGTGCTGATTTTGTCCTTGTAGACAACCCTGTTGTTTATAGAACATTTGATACAACCAGTATAATAACTAATACTGCGTTAACGTATAATAACTCTAAAGGTTCTATAGTAGTTAACACAGGTGCAGGAAATATAGAGTTGCTGTCCGGAATAAGATCAGACGGAAGAATTGCATCTGCAAACGATACTGGTGCTATGTTATCGTTTATTAACGATAATAGTGATCCTATGGTTACCATGGTTGTATTTAATCGTGCTACTGCAAACAATCAAACAGCACAACCAGTAAGATCATATAGATTTACAAAAACTAATTTAATAATAGACTACGATACTAATCCTAGTGAAATGTATCATACAGGGAGAATACCGTCTAACGCTGCTGTTGGTTCACTTCCACTAAACGGAAAGGCTGTCAATACATTATTATTAAATGGCATGTATCAATCTAGCAGTCCAAATGACAATGCAGTTGCATTAAGAGATGGTGCAGGAGATGTACATGTTAGACACATTCAAGTTTCTAATCCAGACGAAAATATAGAAACAGGAAATTTAATTCTATTTAGAAATTCAAATACAAGCGATAACTATGTTAGACGAGCAAATGTCTCTTCATTCCAGTCATGGTTTAGGGCTAACGAACCGAAAGGTGTAGTTAAAGCTTGGATACAATTTAACGGAATAACAGGTTCTACTTATAAGTCACACAACTGTACACTAACTAAACTAGGTACAGGGAAATATAGAATATATTACAATTCATTTTCTACGCCTGCTGCGGGTTCTGTTGTTCCGTTTGTAGGAGTTACTAGTGACGGTCAAATATCTACCGGTATGGCTGCTGGCACTGGGAGACTTAGCTACAATTCATCATTGGTATATTTAAGAAGCACTACTTATACAGATTTAGAATTCTTCAGAACATACAATATTAATTATAATAACTATTCTTTAGATTCGTTTACTAATGTATACGCAGATGCTAACAACATAACATTTACATGGTTCTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
662330c776dbfa845e15c52a39e98242474550bebc6a0943356edb94d8303d55
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5785
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole-Genome Sequence of Pseudomonas phage 30-2 Fujiki,J., Nakamura,T., Nakamura,K., Tamamura,K., Ichikawa,N., Ishiguro,Y. and Iwano,H. 2021-07 — GenBank