Protein

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Genbank accession
QGT52765.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 0,97
Protein sequence
MDSTINGKTVHINNPLDLIGLGRREIEFNIPKADYWEMFKETTQVPTMKRGGYKNLLKGGWVFVDPFNQGKDLWTKDYFTKSGGTVWRTFGASGDIFDSGTYESGYYGFKCPSDKDEEDYVIGDQLSFLQAGKTYTLQFDMKRTTSSIKGDIQNFIGAGTGDWTFIDTSKPFYVNGSLYSTTTDGFISWNDFIDSEDTLWHRCTIIFTCKSPITEPWKRAIRWRAKKDSSWKVKNIMMFEGSELLGTDFRLHDEEYYDWTFYEGIQGMREVSANFGFYYSEDYAFCSAFKVNIHKGFETRGFNPVTQEFECKAEVENFAQIVNPTIKYYQDIKQIPDNVNWNNTIIYNPKPNGIDYLQCKAKGNYMSLYKVRDDNYSSYVPKRWQATFFDSVPSSKWLYGGYCYTGTLQTYEIEN
Physico‐chemical
properties
protein length:415 AA
molecular weight: 48196,31770 Da
isoelectric point:5,28173
aromaticity:0,17108
hydropathy:-0,60699

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGT52765.1
1 415
Domain Start End Length (AA) Confidence
N-terminal 1 248 248 0,0699
Central domain 249 404 157 0,4372
C-terminal 405 415 10 0,9784
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-248
Central
249-404
C-terminal
405-415

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage CHPC1242
[NCBI] 		2675245 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGT52765.1 [NCBI]
Genbank nucleotide accession
MN689513 [NCBI]
CDS location
range 19413 -> 20660
strand +
CDS
ATGGATAGTACGATAAACGGCAAAACGGTACATATAAATAACCCATTAGACCTTATAGGCTTAGGACGTAGGGAAATCGAGTTTAATATCCCTAAAGCTGATTATTGGGAAATGTTCAAAGAAACCACGCAAGTACCTACAATGAAACGTGGAGGATATAAAAACTTGCTCAAAGGTGGTTGGGTATTTGTTGACCCTTTTAACCAAGGGAAAGACTTATGGACTAAAGACTACTTCACAAAATCAGGTGGAACGGTATGGCGAACTTTTGGAGCTAGCGGAGATATTTTCGATTCAGGAACTTATGAAAGTGGGTATTATGGTTTTAAGTGTCCTAGTGATAAAGATGAAGAAGATTACGTTATCGGAGACCAACTATCTTTTTTACAAGCAGGAAAGACGTACACGCTGCAATTTGACATGAAGCGTACAACCTCCTCTATAAAAGGAGATATACAGAACTTCATAGGAGCAGGAACAGGGGACTGGACTTTCATAGACACAAGTAAACCGTTTTACGTTAATGGTTCTTTGTATTCAACAACAACTGACGGTTTCATTAGTTGGAATGATTTCATTGATTCAGAAGATACTTTATGGCATAGGTGTACAATTATATTCACTTGTAAAAGTCCTATAACTGAACCGTGGAAACGAGCGATACGCTGGAGAGCTAAAAAAGATAGTTCTTGGAAAGTAAAAAACATTATGATGTTCGAGGGTTCTGAATTATTAGGGACTGATTTCAGATTACATGATGAAGAATATTATGATTGGACTTTCTATGAGGGTATACAAGGTATGCGTGAAGTGTCCGCTAACTTTGGTTTTTACTACAGCGAAGACTATGCCTTTTGTTCAGCGTTCAAGGTCAATATACATAAAGGGTTTGAAACAAGAGGTTTTAATCCAGTTACACAAGAGTTTGAATGTAAAGCAGAAGTTGAAAACTTTGCACAAATTGTCAACCCTACAATCAAATACTATCAGGACATTAAGCAAATACCTGATAACGTGAATTGGAATAATACTATCATATACAATCCTAAACCTAACGGAATAGACTACTTACAATGTAAAGCCAAAGGGAACTATATGAGCTTATACAAAGTCAGAGATGATAATTATAGTTCATATGTTCCTAAACGTTGGCAAGCTACATTTTTTGATTCAGTTCCTAGCAGTAAATGGTTATATGGTGGATACTGTTATACTGGTACATTACAAACGTACGAGATAGAAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b005651f9347f8742d2fb665bf919600bc090520b85fcf3d7f54ee9cf46c82b7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4211
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequences of 31 Lactococcus lactis Bacteriophages Isolated from Foods Marcelli,B., de Jong,A. and Kuipers,O.P. — — GenBank