Protein

View in Explore
Genbank accession
AMQ65898.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MGAIQTGSGKVLTEGKMTARVGDGVLVTAAEVAAAIGSKLKAPTPPKNTGVGEQPLPPSAGGVGGSYEPALDYEGNLQPGVPGSVTIEIDSKSDKFSTLQDYINLFTSPGLVTGGDFTSNTTHVIVAEGQVLLRLEDDDVSSVRFYDFSETSFSIPQDNDTHYIGVKLDGGAAKVVMTTSFDDFDKDTGIPLGSAVNVLGNVLYLNNPYKTSDAMTNVIQRLDSIAPTVRDGSSQGLIISHTGSRNIAMTAGKVWARLTDFDIPDKNSATDGLLTGWWNGTTLQFAPATQWDNARYNNVVAGTLANVGTNKYACLWFFVHAETGQVGYAYGTADYNSVATASEEQLPSYLTRGFRNQTLFIGRLIFRAGASTPARIDSAFSSGLPVISEGGSGPAPGIETYYDSTGVITGGNLTVNAGNNATFDCSAGVAVFMDFTVPGTPTQDVLEFGPFTAVSVPGIGTRLATYIGIDKNAAIVQQASPFTATQRRTIASLGLVVHSNLSTINTTNIIAETVHAGVNQLHDLMDAIGPINVEGNVIGPAGTGLTLVKSEGRIFRLGANFQNNNADPHNITLGIQNPVTFRYRLSTGTEFANTTAIDPGSYESPLGTYAAVPGASTRFTIQRITLFQSGLIRIQPGQAWYGTMEEAIAGIASEPFSIETNIKENGIARGYLVVQKGATNLSDPAQARFIGISKFGGAAAIGSPTTVQVGTTTTGAAGSNAVVTNSGSASAVVLDFVIPRGATGNTGPTGNTGPQGPVGNTGAAGAAATVTVGNTITVAYGNGAVVTNSGNSSAARLDFTLVTGPQGPVGNTGAQGVPGAAATIGIGTVTTGAAGSNAVVTNSGNTSAATFNFTIPRGATGATGANGATGATGNTGAPGADGAAATVTLASTLTGSPGTQANVVNLGNTSAAVFQFTVPTGPTGATGSQGPAGTITIGSTTTGAPGTNATVTNSGNSTVANLQFTIPRGNTGATGSTGPQGNAGTIAVGNVATGAAGSNVIITNTGNSTQAVLNFTIPRGDTTSAAWGTISGNIATQTDLQNALDGKLSLNGGGTVTGNVIVNGLTFFGEPNPWSFGIRFEGANGSVYISSKTLDDQFYGDLNLRGFQLKFNDNLVAMMDDVFANTTASAKGLSTVVVTANTANVNALFDQGFSAFAANTTATNLPAASLNISGINLVPAQANQGAQIAVTNTTGRLFWRGYSNSAATTWREAVDTSSAQTVAGTKTFSNNLIIQAASGLDLIGRNTTAAPAANVALLGLHGGNTSVIGASIVFRANEAWSGAANTSSKIVLRTVPNGSNVIADTLTVSASGTFVNSALNLLSSMVVSGAVVMNSSLAVRDLSYFGGGANNTLNKFRVINNGTSIRLDGVTSDASAFANLEFRGTNFLFTTGRIQTDSAHFNSLSTGVVLSAEGGPVYLRPNGKDNNNQATMIGTNGTMEVQGHIQLRANGRNVQMFDNNNDVACIDMGSGYGTNTDRVGWIVNRNAAGPLHLEARNLDVKLRIGAGAGFTSHNAQFYNDMSPRTVNPNDYNSAGILTTGSYGGMIGMKDNAGSGTYFGGMYMASGYMYLGVGGAGTTGIAAVVRLQPDGQVTFTGNQININGTSPTIYCRDTDNGNDSWIHMNDGNHGFLAHNAFAWACFRNSGNDWQCQNNVIAYASDRRLKKNIQDVPYNLVSDFFDRVRIRQFDWDKEQLDKYKVGIKAREGEVGAVAQEMQEVYPDAVQVNEAHNPIKTEENPNPEKPDFLTINWEKTVPLLIAEIQQLRARVTELESKV
Physico‐chemical
properties
protein length:1775 AA
molecular weight: 183312,14860 Da
isoelectric point:5,23006
aromaticity:0,07324
hydropathy:-0,08180

Domains

Domains [InterPro]
DC_1386
STR
298–738
DC_1386 IPR050149 DC_1954
DC_1769
STR
762–821
DC_1769 DC_1769 cd19958 IPR030392
DC_1769
STR
817–886
DC_1769 IPR030392 Coil
AMQ65898.1
1 1775
Architecture
STR
STR
STR
STR
STR 298-738 | STR 762-886 | STR 929-984 | STR 1089-1775
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMQ65898.1
1 1775
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,9394
Central domain 85 283 200 0,0544
C-terminal 284 1775 1491 0,5848
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-283
C-terminal
284-1775

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage vB_SmaS-DLP_6
[NCBI] 		1651816 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMQ65898.1 [NCBI]
Genbank nucleotide accession
KU682439.2 [NCBI]
CDS location
range 58653 -> 63980
strand +
CDS
ATGGGTGCAATTCAGACTGGCTCGGGTAAAGTCCTCACAGAAGGCAAGATGACCGCTCGCGTAGGCGACGGCGTCCTAGTCACAGCCGCAGAAGTTGCTGCTGCCATCGGCTCTAAGCTGAAGGCACCAACTCCTCCGAAGAACACTGGCGTCGGCGAACAGCCGCTGCCTCCTTCTGCAGGCGGCGTTGGTGGATCATACGAGCCAGCTCTCGACTACGAAGGCAACCTACAGCCAGGCGTTCCTGGTTCTGTAACTATCGAGATCGACAGCAAGTCTGACAAGTTCAGCACGCTGCAGGACTACATCAATCTCTTCACATCACCGGGTCTCGTAACCGGTGGTGACTTCACATCCAACACCACGCACGTCATTGTCGCCGAAGGTCAGGTTCTCCTGCGCCTTGAGGACGACGATGTATCTTCTGTGCGCTTCTACGACTTCTCCGAGACAAGCTTCTCGATCCCGCAGGACAACGACACGCACTACATCGGCGTCAAGTTGGACGGCGGTGCCGCGAAGGTCGTAATGACGACCAGCTTTGACGACTTTGACAAGGACACCGGCATCCCGCTCGGTAGCGCCGTCAACGTTCTCGGCAATGTCCTCTACCTGAACAACCCATACAAGACGTCCGATGCGATGACCAACGTCATCCAGCGTCTTGATTCCATTGCGCCTACTGTTCGCGATGGTTCGTCACAGGGTCTCATCATCTCGCACACCGGCTCGCGTAACATCGCGATGACGGCTGGCAAGGTGTGGGCACGCCTCACTGACTTTGATATCCCTGACAAGAACTCTGCCACCGACGGTCTCCTGACTGGTTGGTGGAATGGCACAACACTACAGTTCGCACCCGCTACTCAGTGGGACAACGCACGCTACAACAACGTAGTAGCAGGAACGCTGGCGAACGTTGGTACGAACAAGTATGCCTGCCTCTGGTTCTTCGTCCACGCCGAGACCGGACAAGTCGGCTACGCCTACGGTACGGCTGATTACAACAGCGTTGCGACCGCTTCTGAAGAGCAACTTCCGAGCTATCTGACGCGCGGGTTCCGCAATCAGACCCTGTTCATCGGTCGCCTCATCTTCCGCGCGGGTGCAAGTACGCCAGCGCGAATCGACAGTGCGTTCAGCTCTGGTCTGCCAGTCATTTCCGAAGGTGGAAGTGGACCGGCTCCTGGAATCGAGACCTACTACGACTCGACTGGTGTCATCACGGGCGGCAACCTAACTGTCAACGCCGGCAACAACGCGACGTTCGACTGCAGCGCTGGTGTCGCTGTATTCATGGACTTCACTGTTCCAGGTACTCCGACACAAGACGTCCTTGAATTTGGACCGTTCACCGCAGTCTCAGTGCCTGGCATCGGCACGCGCCTCGCGACCTACATCGGTATCGACAAGAACGCTGCGATTGTCCAGCAGGCAAGCCCGTTCACAGCTACTCAGCGTCGCACAATCGCGTCGCTTGGTCTGGTCGTCCACTCCAATCTCAGTACGATCAACACGACCAACATTATCGCTGAGACAGTGCACGCGGGTGTTAACCAGCTGCACGATCTTATGGACGCTATTGGTCCGATCAATGTTGAAGGTAACGTCATCGGACCGGCTGGCACAGGTTTGACGCTTGTCAAGAGCGAAGGTCGTATCTTCCGTCTTGGTGCCAACTTCCAGAACAACAACGCCGATCCGCACAACATTACGTTGGGCATTCAGAACCCGGTCACGTTCCGCTACCGTCTGTCGACCGGTACAGAGTTTGCGAACACGACCGCAATCGATCCGGGATCGTACGAGTCGCCACTCGGCACATACGCAGCAGTTCCTGGCGCAAGCACCCGCTTCACCATCCAGCGCATCACACTCTTCCAGTCTGGTCTCATCCGCATCCAGCCGGGTCAGGCATGGTATGGTACGATGGAAGAAGCGATCGCAGGCATCGCGAGCGAACCGTTCTCCATTGAAACGAACATCAAGGAAAACGGCATCGCGCGTGGCTACCTTGTTGTACAGAAGGGCGCGACCAACCTTTCCGATCCGGCACAAGCTCGCTTCATTGGTATCTCGAAGTTCGGTGGCGCAGCAGCCATCGGTTCGCCAACCACAGTTCAGGTAGGCACCACGACCACTGGCGCAGCCGGTTCTAATGCGGTTGTTACGAACAGCGGTTCTGCTTCTGCAGTCGTCCTTGACTTCGTCATCCCTCGCGGCGCAACTGGTAACACTGGTCCAACAGGCAACACCGGTCCGCAAGGTCCGGTGGGTAACACAGGCGCAGCAGGTGCTGCGGCAACTGTCACTGTCGGCAACACGATCACTGTCGCCTATGGCAACGGTGCCGTAGTGACGAACAGCGGTAACAGCAGCGCAGCACGTCTTGACTTCACGCTCGTGACTGGTCCGCAAGGTCCAGTCGGTAACACGGGTGCGCAAGGCGTTCCAGGTGCGGCGGCTACAATCGGCATCGGTACTGTAACTACAGGTGCAGCCGGTTCCAACGCCGTAGTGACGAACAGCGGCAACACGTCTGCTGCCACTTTCAACTTCACGATCCCACGCGGCGCAACTGGTGCTACAGGCGCCAACGGTGCCACGGGTGCGACTGGTAACACGGGAGCTCCTGGTGCTGACGGTGCAGCAGCTACTGTCACTCTGGCATCGACGCTCACCGGTTCTCCTGGCACTCAGGCAAACGTTGTCAACCTCGGCAACACTTCTGCAGCCGTCTTCCAATTCACAGTTCCGACTGGTCCTACCGGCGCAACCGGTTCGCAAGGTCCAGCGGGCACGATCACCATTGGTTCAACGACCACTGGTGCTCCGGGAACAAACGCGACTGTCACGAACTCCGGCAACTCGACTGTTGCAAACCTTCAGTTCACGATCCCGCGCGGTAACACGGGCGCGACCGGTTCGACAGGACCACAGGGTAACGCCGGTACGATTGCTGTTGGCAACGTTGCTACTGGTGCGGCTGGCTCCAACGTCATCATCACCAACACCGGTAACTCGACGCAGGCAGTCCTGAACTTCACCATCCCGCGCGGCGACACTACGTCTGCGGCGTGGGGAACGATCTCCGGCAACATTGCAACACAGACTGATCTTCAGAACGCGCTCGATGGAAAGCTGTCGCTCAACGGTGGCGGCACTGTCACGGGCAACGTCATCGTCAATGGTCTGACGTTCTTCGGTGAGCCAAACCCGTGGTCCTTCGGTATCCGATTCGAGGGTGCCAACGGCTCCGTCTACATCAGCTCGAAGACTCTCGACGACCAGTTCTATGGCGACTTGAACCTGCGCGGCTTCCAGCTGAAGTTCAACGACAACCTCGTTGCAATGATGGACGACGTGTTCGCGAACACGACCGCATCGGCGAAGGGATTGTCGACGGTCGTTGTCACCGCGAACACTGCAAACGTCAATGCACTGTTCGACCAAGGCTTCAGCGCATTTGCAGCAAACACCACAGCAACCAACTTGCCTGCGGCGTCTCTCAACATCAGCGGTATCAACCTCGTTCCTGCGCAAGCTAACCAGGGTGCGCAGATTGCGGTCACGAACACGACTGGACGACTGTTCTGGCGCGGCTACAGCAACAGTGCTGCTACGACATGGCGCGAAGCTGTTGACACTTCCAGCGCGCAGACTGTCGCAGGAACCAAGACGTTCAGCAACAACCTGATCATCCAAGCAGCATCTGGTCTCGATTTGATCGGTCGCAACACGACGGCGGCTCCTGCAGCAAACGTTGCCCTCCTCGGCTTGCACGGCGGCAACACGTCGGTTATCGGTGCGTCAATCGTCTTCCGTGCCAACGAAGCATGGTCTGGCGCTGCGAACACCAGCTCAAAGATCGTCCTGCGTACAGTTCCAAACGGTTCTAACGTCATCGCCGATACGCTAACGGTTTCGGCAAGCGGAACGTTTGTCAACTCTGCACTCAACCTGCTCAGTTCAATGGTCGTAAGTGGTGCTGTTGTAATGAACAGCAGCTTGGCAGTGCGCGATCTGTCGTACTTCGGTGGCGGCGCAAACAATACGCTCAACAAGTTCCGCGTCATCAACAACGGAACTAGCATTCGTCTGGACGGAGTAACATCCGACGCTTCTGCGTTTGCAAACCTTGAGTTCCGAGGAACGAACTTCCTGTTCACGACAGGTCGTATCCAGACTGACTCCGCGCACTTCAACTCGCTGTCTACTGGCGTCGTTCTGTCTGCGGAGGGTGGTCCGGTCTATCTCCGCCCGAACGGCAAGGACAACAACAACCAAGCGACCATGATCGGCACCAATGGTACGATGGAGGTCCAGGGACACATTCAGCTTCGTGCTAACGGTCGAAACGTGCAGATGTTCGACAACAACAACGACGTTGCATGTATCGACATGGGTTCTGGTTACGGAACCAACACGGACCGCGTCGGTTGGATCGTCAACCGAAATGCAGCAGGTCCGCTCCACCTAGAAGCACGAAATCTCGACGTCAAGCTGCGCATTGGTGCGGGTGCAGGATTCACTTCGCACAACGCTCAGTTCTACAACGACATGTCGCCGCGCACTGTCAACCCGAACGACTACAACTCTGCGGGTATCCTGACGACAGGTAGCTACGGCGGAATGATCGGCATGAAGGACAATGCCGGTTCTGGTACATACTTCGGCGGCATGTACATGGCATCTGGATACATGTATCTCGGTGTCGGCGGAGCCGGTACAACCGGTATCGCTGCAGTCGTTCGTCTCCAGCCTGACGGGCAGGTCACGTTCACCGGCAATCAGATCAACATCAACGGAACGTCACCTACGATCTACTGTCGCGATACCGACAACGGTAACGACAGCTGGATCCATATGAATGATGGTAACCACGGTTTCCTGGCTCACAACGCCTTCGCGTGGGCGTGCTTCCGTAACAGCGGCAACGACTGGCAGTGCCAGAACAACGTCATCGCCTACGCTTCGGACCGCCGTCTTAAGAAGAACATTCAGGACGTTCCGTACAACTTGGTGTCCGACTTCTTCGATCGCGTTCGCATCCGCCAGTTCGACTGGGACAAGGAGCAACTTGATAAGTACAAGGTCGGCATCAAGGCGCGCGAAGGCGAAGTCGGTGCTGTGGCACAGGAGATGCAGGAAGTCTATCCTGACGCTGTCCAGGTCAACGAAGCTCACAACCCGATCAAGACAGAAGAAAACCCGAACCCAGAGAAGCCGGACTTCCTGACGATCAACTGGGAAAAGACTGTGCCGCTGCTCATCGCTGAAATTCAGCAGCTGCGTGCACGAGTTACCGAATTGGAGAGCAAGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6bd1b50e1a99d64f1fa3d6b5f6fe214efd1e80f70462006d35dd54faf2b9c18b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5834
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of chimeric Stenotrophomonas maltophilia phage DLP6 Peters,D.L. and Dennis,J. 2017-03-14 — GenBank