Protein

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Genbank accession
NP_046580.1 [GenBank]
Protein name
phosphodiester glycosidase family protein
RBP type
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAGFYRYDQNLDKYVPMPVELLASEGEEYTAPKITQKFNEVETKTTEILNKVLTDDRYFTVTSSFKQDATLGIEYYVTKVTPKTTEAKKSMVQKTFAYDFEKSIDPTSSYFGTTNRETVLSMAKRKRSVVAINASGWRSNGEVMGLQIKDGVLYKDYDAAGYTGAEACVFFDDGTMKVYGNREVDADILISKGARNSFAFGIWLVKDSKPRTAQMTTWADLNVKHPRQAIGQRSDGTLVIITVDGRSLRSSGITAYDMPSLFLSEGCINAFLLDGGGSSQTAVEGKYINNISDGIERAVVDTLTISYPDDDTDSRFFEVQEGRGLATSLNRRVEFIESKPTWNVLDLGFSPDGLIDNTAKFKKALSDLSEKGGGKLHFPKGTYLIGKQNTTSASEKIELPSNVSIVGERRSYTKLLRNPNHSLDELLRITDHNYIEGIEIDGNSSVNKSSCRLIAGGNIKSFKMKDCSLVNATDRGVSIHGIGKSITIEGMYISNIANECINVAEGEIIKLIDSEITFSGTALWVGNAANIFTKNNLAKSLKTFVRYKNSQNAICSGNIITNNIDRAIWGSVREAVFSDNVFKQCHSDYHLYFIQEDTGTNDLIVTGNSVYSDVEGTAFIRTPSDIDRRRVSGNVGNIPSLNLD
Physico‐chemical
properties
protein length:644 AA
molecular weight: 71097,08140 Da
isoelectric point:5,75025
aromaticity:0,08851
hydropathy:-0,33866

Domains

Domains [InterPro]
PTHR40446
Unmapped
13–309
PTHR40446 IPR011050
IPR018711
STR
115–305
IPR018711 IPR012334
IPR018711
STR
128–304
IPR018711 IPR012334
IPR024535
ENZ
343–562
IPR024535
NP_046580.1
1 644
Architecture
STR
STR
STR 115-305 | STR 340-639 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
NP_046580.1
1 644
Domain Start End Length (AA) Confidence
N-terminal 1 123 123 0,5060
Central domain 124 633 511 0,6943
C-terminal 634 644 10 0,1589
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-123
Central
124-633
C-terminal
634-644

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage SPBc2
[NCBI] 		2932878 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bacillus subtilis
[NCBI] 		1423 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_046580.1 [NCBI]
Genbank nucleotide accession
NC_001884 [NCBI]
CDS location
range 24182 -> 26116
strand -
CDS
ATGGCTGGTTTTTATAGATATGATCAAAATTTAGATAAATATGTTCCGATGCCTGTTGAACTACTAGCTTCAGAAGGAGAAGAATACACCGCTCCTAAGATTACTCAGAAGTTTAATGAAGTAGAAACGAAAACAACAGAAATTTTAAACAAGGTATTAACTGATGACAGATATTTTACAGTAACAAGTTCTTTTAAACAGGATGCCACACTTGGTATTGAGTACTATGTTACAAAGGTTACTCCTAAAACAACCGAAGCTAAAAAAAGTATGGTGCAAAAAACGTTTGCATATGACTTTGAAAAATCCATTGATCCCACATCTTCTTATTTTGGTACAACAAATCGTGAAACAGTTTTAAGTATGGCAAAACGAAAAAGATCTGTTGTTGCAATAAACGCTAGTGGTTGGCGATCAAATGGTGAAGTCATGGGGCTTCAAATTAAAGACGGAGTTCTCTACAAAGATTATGACGCTGCTGGATACACAGGCGCTGAGGCTTGTGTATTTTTTGATGATGGAACTATGAAGGTTTACGGAAACAGAGAAGTTGATGCCGACATCCTAATTTCTAAAGGCGCACGAAACTCTTTTGCTTTTGGCATTTGGCTAGTTAAAGATTCTAAGCCAAGAACGGCTCAAATGACTACATGGGCAGATTTAAATGTTAAGCATCCTCGACAAGCCATTGGGCAAAGATCTGATGGTACACTAGTTATCATTACTGTAGATGGCCGCTCACTTCGATCCAGTGGTATTACAGCTTATGATATGCCATCTTTATTTTTATCTGAAGGCTGTATTAATGCATTTCTTTTAGATGGTGGTGGAAGCTCTCAAACTGCTGTTGAAGGAAAATATATTAATAACATTAGTGATGGCATTGAACGTGCAGTGGTCGATACCTTAACAATTTCATATCCTGATGACGATACAGATAGCAGATTTTTTGAAGTTCAAGAAGGAAGAGGTTTGGCAACAAGTCTAAACAGACGTGTAGAGTTTATTGAATCCAAGCCTACTTGGAATGTATTAGATTTAGGCTTCTCACCAGATGGCTTAATCGATAATACAGCTAAGTTTAAAAAAGCCCTTAGTGATTTATCTGAAAAAGGTGGAGGGAAACTACATTTTCCGAAAGGTACATATTTAATCGGTAAGCAGAATACAACTAGCGCTAGTGAAAAAATTGAACTCCCTTCAAATGTCTCAATTGTTGGTGAAAGACGATCCTACACTAAACTCCTTCGAAATCCAAATCACTCACTTGATGAATTGTTGCGAATCACAGATCACAATTATATAGAAGGCATTGAAATTGATGGCAATAGCAGTGTAAATAAGAGTAGCTGCCGATTGATCGCAGGTGGAAATATAAAATCATTTAAAATGAAAGACTGCAGCTTGGTTAATGCTACAGACCGAGGAGTGAGTATTCACGGGATCGGCAAGTCTATAACGATTGAAGGAATGTATATTTCCAATATAGCCAACGAGTGCATCAACGTTGCTGAAGGAGAAATTATTAAACTAATTGACTCTGAGATCACATTTAGCGGTACTGCCCTTTGGGTGGGTAATGCTGCAAATATCTTCACTAAGAATAACCTCGCAAAATCCTTAAAAACCTTCGTCCGGTACAAAAACTCTCAAAATGCAATTTGTTCAGGAAACATTATCACTAATAATATTGATCGCGCAATTTGGGGATCTGTAAGAGAAGCTGTTTTCTCTGATAATGTTTTCAAGCAATGCCACTCTGATTATCACCTTTACTTTATTCAAGAAGACACTGGAACAAACGATTTAATTGTAACTGGAAACTCAGTTTATAGTGATGTTGAAGGAACAGCTTTCATTAGAACTCCATCAGATATAGACAGAAGACGAGTGTCGGGTAACGTAGGTAATATACCTAGCTTGAACTTGGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ea54b5b71ec11a4785ce0567a2281732a0270aa0395bdf5bff487cfc7c2a467a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8462
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete nucleotide sequence of the Bacillus subtilis SPbetac2 prophage Lazarevic,V., Duesterhoeft,A., Soldo,B., Hilbert,H., Mauel,C. and Karamata,D. 1999-05-01 — GenBank