Protein

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Genbank accession
YP_010113560.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDIKSNTQLINTFAGGMNTDLSDMLLKSSQYRLAKNVRYVTNDEENGGELRMVDGCVFGGDVSDGFIIDDEYKNRLKVLYTGAIRNYAIAIVKIEVNDGERINVIDPHNTSKELTNSHWWVLVSKNPFENVDNDTYIQMDKFKVAFGPCGATLGNKLSVVCRYENYNNVHVYIADGINPVLSINIGHAFDDGFVPSSDYNAITSNPQVTFKRIQFVDLVDGALPAGMVEYSYQYFNKYGNESKISVPTKLIPIVKGSGNYAEGYRSGETSNRGVELRFPGKHESFDSMRIYRIQYIENGQAPTVDVIYESNVNTTDFWTYIDGGQPPLYNVTLEEYNANSGIHIIPKVIESKEDRLFAANIKKDLNSFVSQDILNWDARAYRFPKDSTTTTLYTYGTTSNPITVDNTYLVPKKHDCWQSTNNINKDLTEDDPQYQYNSSVVGGSGKNISWSFNDIKTSADANISDSDYYSIPGTNGKPLSLQDDRSLYVLNYTKFDDGNHLMGTDIKASLANSKTSYTYPSLKADELYRYGIVLYDKYGNASPVKWIADIRTPIELPIYTNEFSDLTTSQRGLFFDVNEQSLIDIGVTSYEIVRCIRSEKDIKNLSIGVLSRPIKRLTNKYNSEYSQATASYPYTPSGWLTTADYWAGSNRLFDFSDLDNTQERSWWAESNCAIRHVDHDDNTTHTTYSEPNKSIFQFVSPEVCYAQDSFKQLLQGQSIKIKPLTYLYGYRSRKTKDDFDLDSTKIVLPLPTSTTSVMSYGLFLDLVLYPGNEYTRMYVENTAVMYRLMPVTGGNGLGGYKVDYIPLHENATGNQNQLDIITNCSSVSTMFYYGDKKLSDCVLGNAIKDITINYKQYSIYREATGYEKNGVGFNLLDTNKRYSYIKLYIASDNIVVSKFANGCREIINNTSVSSIGSAEVEDFAFADTMQWDDFAEIKKSGETYSLKYTNTSTAIGNNSFVNWVSNGAYNVPATGDWSTLKLDQADLQDDMLLQTNVVMGPGGACMLLNIKDADVALWNSAAVPNEAFKDTKSYMYKHTTLNGLPIGGGEKIYVVPESRLGTFLCSIQHTITPYSGFSYENRKQDIYYSFGDLFVPTEVGTSQTHLNFPEGWYRRPVFNGDCYRQAMEYVSQHKYYFAPNKYTKNACIVYSFPTESSINLAFTDGFEFHKNNAPTEIQEKPADVYKKFVQTKSLYRYNPVYSAHSTAHPKAMQLDRSDYDIEFDTRCFYSNVKSNNENTDNWLHFMPANFIDVDSRKGPITNLRTFNNQLFFWQTDGTGILSVNERAAVSDQSGLPLMLGTGGVLERFDYLNTACGMKENEFADAQSDSVLYWWDHTRKELCAHAAGNGLGVNSLSKEKGVQNLINVKAKQNLLASDPTLIYDKKYNELIAYIATTAEDDTTKDGTPSEKITATDDGSMIYSELTGQFVSLVDVYPKHAILFGDKIYMMSDKDANDKYLWLWNYQECKKNPDVSYVRGFSNMLYPYVKYVINDNNTFPKVFDNITFGGRFYGGDKEDITPLRFKFKTPLKQQGDADGTSVENREYDFRMAIPRHKNSQYGDRLRGKTMQCEMWSLKSDVDFSLQYITTKYRISWV
Physico‐chemical
properties
protein length:1595 AA
molecular weight: 180786,76450 Da
isoelectric point:5,25570
aromaticity:0,12602
hydropathy:-0,49574

Domains

Domains [InterPro]
IPR057889
STR
8–1452
IPR057889
DC_1659
RBD
1434–1595
DC_1659
YP_010113560.1
1 1595
Architecture
STR
RBD
STR 8-1452 | RBD 1453-1595
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010113560.1
1 1595
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0993
Central domain 11 204 195 0,9266
C-terminal 205 1595 1390 0,3590
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-204
C-terminal
205-1595

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured phage cr273_1
[NCBI] 		2772095 Uroviricota > Caudoviricetes > Crassvirales > Oafivirinae > Buhlduvirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010113560.1 [NCBI]
Genbank nucleotide accession
NC_055904 [NCBI]
CDS location
range 82969 -> 87756
strand -
CDS
ATGGATATTAAATCAAATACACAATAGATAAATACATTCGCTGGCGGTATGAATACTGACTTGTCAGACATGCTTTTAAAGTCGTCTCAGTATAGATTGGCTAAAAACGTACGTTATGTCACAAATGACGAGGAGAACGGCGGAGAATTACGAATGGTCGATGGTTGTGTGTTTGGTGGAGATGTATCTGATGGTTTCATTATAGATGATGAATATAAAAACCGGTTAAAAGTACTTTATACAGGGGCTATTAGAAATTACGCAATAGCTATAGTTAAAATAGAAGTTAATGACGGAGAAAGAATTAATGTTATAGACCCACACAACACAAGTAAAGAACTTACAAACTCTCATTGGTGGGTATTGGTTTCAAAAAATCCGTTTGAAAACGTAGACAACGACACCTATATACAAATGGATAAATTTAAGGTTGCGTTTGGCCCTTGTGGAGCAACTCTTGGAAATAAATTAAGTGTTGTATGTAGATACGAGAACTATAATAACGTTCACGTTTATATTGCGGACGGAATAAATCCAGTATTGTCTATAAACATAGGACATGCGTTCGATGATGGATTTGTGCCAAGTAGTGACTATAACGCTATAACATCGAACCCACAAGTAACATTTAAACGTATACAATTTGTTGATCTTGTAGACGGTGCTTTACCAGCAGGAATGGTTGAATACAGTTATCAGTACTTTAATAAGTACGGAAACGAATCTAAGATTTCAGTACCAACAAAGCTGATACCAATTGTAAAAGGATCTGGTAATTATGCAGAAGGATATAGATCTGGAGAAACATCTAATCGTGGTGTAGAACTCCGGTTTCCAGGAAAACACGAATCGTTTGATTCTATGCGTATATATCGTATACAGTACATAGAAAACGGGCAAGCTCCTACGGTTGATGTTATATACGAATCAAATGTCAACACAACAGATTTCTGGACATATATAGATGGTGGACAACCACCTCTGTATAATGTAACTTTAGAAGAGTATAACGCCAACAGCGGAATACACATTATACCAAAAGTAATAGAATCCAAAGAAGATCGCTTATTTGCAGCAAATATTAAGAAAGACTTAAACTCATTCGTTTCTCAAGATATTTTAAACTGGGATGCTAGAGCATATAGATTTCCAAAAGACAGTACAACAACCACACTGTATACTTATGGTACAACAAGTAATCCTATTACTGTAGACAACACGTATTAGGTGCCAAAGAAACACGACTGTTGGCAATCTACAAACAACATAAATAAAGACCTTACTGAAGACGACCCGCAATATCAATATAACAGTAGTGTTGTTGGAGGAAGCGGAAAGAATATATCATGGTCTTTTAATGACATTAAAACATCTGCTGACGCAAATATTAGTGATAGTGATTATTATAGTATTCCTGGCACAAATGGAAAACCATTATCTTTACAGGATGATAGAAGTCTGTATGTGTTAAATTACACAAAATTTGACGATGGAAATCATCTTATGGGAACTGATATTAAAGCTTCCTTAGCCAACTCAAAAACATCATACACATATCCATCGTTAAAAGCTGATGAATTATATAGATATGGTATTGTACTTTATGATAAATACGGAAACGCAAGCCCCGTAAAATGGATTGCCGATATAAGAACTCCGATAGAGTTACCAATATATACGAACGAATTTTCTGATTTAACAACGTCACAGCGTGGATTATTTTTTGATGTTAATGAACAATCTTTAATAGATATCGGTGTAACGTCTTACGAGATAGTTAGATGTATAAGATCGGAAAAAGACATAAAGAATTTGTCTATTGGAGTATTGTCTAGACCAATAAAAAGGCTTACGAACAAATATAATTCGGAATATTCACAGGCAACCGCATCTTATCCGTATACACCGAGTGGATGGCTTACTACAGCAGATTACTGGGCAGGATCGAATAGACTGTTTGATTTTTCAGATTAGGATAACACTCAAGAAAGATCGTGGTGGGCAGAATCAAACTGCGCAATACGCCACGTTGATCATGACGATAATACAACGCATACTACATATAGCGAACCGAACAAATCTATATTCCAATTTGTATCTCCCGAGGTTTGTTATGCACAAGATTCGTTTAAACAACTTTTACAAGGACAATCTATAAAAATTAAACCTCTTACATATTTGTACGGATATAGATCAAGAAAGACTAAAGACGATTTTGATCTTGATTCTACAAAAATAGTATTACCATAGCCCACTAGCACAACCAGTGTAATGTCGTACGGCTTGTTTTTGGATTAGGTTTTATATCCAGGAAACGAATACACAAGAATGTATGTAGAAAATACAGCCGTGATGTATAGACTAATGCCGGTTACTGGTGGCAACGGATAGGGTGGGTATAAGGTTGATTATATTCCACTACATGAAAATGCAACCGGAAATCAAAATCAGCTAGATATTATTACAAACTGTTCGTCTGTATCTACAATGTTTTATTATGGTGATAAAAAATTATCTGATTGTGTTTAGGGGAATGCTATAAAGGATATAACCATCAATTATAAGCAGTATTCAATTTATAGAGAAGCAACTGGGTATGAAAAAAATGGAGTTGGTTTTAATTAGCTTGATACGAACAAAAGGTATTCGTATATAAAACTATATATTGCATCTGACAATATTGTTGTTTCTAAATTTGCCAATGGTTGTAGAGAAATAATTAACAACACATCAGTATCTTCTATAGGTTCTGCCGAAGTTGAAGATTTTGCGTTCGCAGACACAATGCAATGGGATGACTTCGCAGAGATAAAAAAGTCTGGAGAAACTTATTCGTTAAAATATACAAACACGTCTACTGCCATAGGAAACAACTCCTTTGTAAATTGGGTATCTAATGGAGCATATAATGTACCTGCTACAGGAGACTGGTCAACACTTAAACTAGACCAAGCAGATTTACAAGACGATATGTTGTTACAAACAAACGTTGTAATGGGTCCTGGTGGCGCGTGCATGTTATTAAATATAAAAGATGCAGATGTTGCGTTGTGGAACTCTGCTGCTGTACCAAACGAGGCGTTTAAAGATACTAAAAGCTACATGTATAAACACACCACCCTAAACGGACTTCCTATTGGCGGCGGAGAAAAAATATATGTTGTACCAGAAAGCAGACTTGGTACATTTTTGTGTAGTATACAACACACAATAACACCGTATAGCGGATTCTCATACGAAAACAGAAAACAGGATATATATTATAGCTTTGGAGATTTATTTGTTCCTACAGAAGTTGGAACTTCACAAACACACCTTAATTTCCCAGAAGGATGGTATAGACGTCCTGTATTCAACGGCGACTGTTACAGACAAGCAATGGAATATGTATCACAGCACAAATATTATTTTGCACCAAATAAGTATACAAAGAATGCTTGTATTGTATATTCGTTCCCAACAGAATCGTCTATAAACCTTGCATTTACTGATGGATTTGAATTCCATAAAAACAACGCTCCAACAGAGATACAAGAAAAACCAGCAGATGTATACAAGAAGTTTGTTCAGACAAAGTCTTTATATAGATACAACCCAGTATATAGCGCACACAGTACAGCTCATCCAAAAGCAATGCAGCTTGATAGAAGCGATTACGATATAGAATTTGATACAAGATGTTTCTACTCTAACGTAAAGAGTAATAACGAAAATACTGATAATTGGTTGCATTTTATGCCAGCAAACTTTATCGACGTTGATAGTAGAAAAGGCCCAATAACGAACCTAAGAACATTTAATAACCAGCTGTTCTTTTGGCAAACAGACGGTACCGGAATATTATCCGTAAACGAGAGAGCTGCTGTTTCCGATCAATCTGGACTTCCATTGATGCTTGGTACAGGCGGAGTATTAGAGAGATTTGATTACCTTAATACTGCTTGTGGCATGAAAGAAAACGAATTTGCAGATGCTCAATCTGATTCTGTACTATATTGGTGGGATCATACAAGAAAAGAACTTTGTGCACATGCTGCAGGAAATGGTCTTGGCGTAAATTCTCTATCAAAAGAAAAAGGAGTACAGAATTTGATAAACGTTAAGGCTAAACAAAACCTATTGGCATCAGATCCAACTCTGATATACGATAAGAAGTATAATGAGCTTATTGCCTATATAGCAACAACAGCAGAAGATGATACTACTAAAGATGGCACACCATCTGAAAAAATTACAGCTACAGACGACGGTTCTATGATATATAGTGAACTTACTGGACAGTTTGTTTCTTTAGTAGATGTATATCCAAAACACGCAATATAGTTTGGAGATAAAATATATATGATGTCTGACAAAGATGCAAACGACAAATACTTGTGGTTATGGAACTATCAAGAGTGCAAGAAAAACCCTGATGTTTCGTATGTAAGAGGATTTTCTAATATGCTTTATCCGTACGTAAAGTACGTCATAAACGACAATAATACATTCCCAAAAGTATTTGATAATATTACATTCGGCGGAAGATTTTATGGTGGTGACAAAGAAGATATTACTCCGTTACGTTTCAAGTTTAAGACACCGCTAAAACAACAAGGTGATGCTGATGGAACTTCTGTAGAGAATAGAGAATATGACTTTAGAATGGCTATTCCTCGTCATAAAAATTCGCAGTATGGAGATAGATTAAGAGGAAAAACAATGCAGTGTGAGATGTGGTCTTTAAAATCTGACGTAGACTTTTCATTGCAATATATAACAACTAAATATAGAATATCTTGGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a21b744b03d49bf7d38993351d6a7ba2648d7adf2cf033c6cce6a520900864b7
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5743
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. 2023-03-24 — GenBank