Protein

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Genbank accession
WJJ57298.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MSRELMPKSGIMMPHVVINRDAAVVGVSTVDGAAGAINLTEKYLQKSDAEATYQTKAEGATKQYVTDAINPIMTNALFKDDPFVNNDTPIRSGGGNGVESVDMIKVTPENTIKLGSYASSVQGVEIHSAGRLQVVDQNDSGVETKYPVYSKRYRPEVEDLPFASIGSYVKDSKGRTIGVTRTGINSDIKQFTQKVTFQQPVTIPDAVGDYDAVTLRQLRNSGGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVLSDGQLLNRADYPDLWAYAQLLSPITDEDWRSSMYNRGKYSTGDGSTTFRVPDRNGIQRSGVNGFVGEDSLGALYGRGDGGASAANGLVFDSAAPNIYGNIGGVVAYGQTGAIVRGQEEMALAPQPTTGNGVLRVSLDASKVSPIYGRSNSEIMGRNFVGVWTIRAHGGFTAANTSWSVIDSDSTEPASGTVVRGGSVKSEYKIGTSPKYQAYLQAYGKIGGLAIDRGAVLSNGVQEWFFNQDGTLYFPDAETQIGTLRSDGALHISAYVRPKDIVVNPLNSVGVAASERNAIRMINYANVPEGGYINSVGGDWYDGTWTLGGVRSGSTLLDRAQLNVYDGLSGSASYLFGSDGIARCQEWRSTSDERIKSNIERISDPLSKMKNIKGVTWVLETNGSVGYGFIAQDVEKDFPEAVSEIKASPVTLRDGSVLDNVKSVNTSGVAAALHHEAILELMKQVEDLKKEVSELKSSK
Physico‐chemical
properties
protein length:728 AA
molecular weight: 77905,91680 Da
isoelectric point:5,33425
aromaticity:0,07967
hydropathy:-0,30453

Domains

Domains [InterPro]
DC_1514
STR
20–315
DC_1514 DC_2049 DC_0203
SSF88874
STR
251–422
SSF88874 IPR030392 Coil
IPR030392
CHP
620–721
IPR030392
WJJ57298.1
1 728
Architecture
STR
RBD
STR 20-445 | RBD 580-728
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WJJ57298.1
1 728
Domain Start End Length (AA) Confidence
N-terminal 1 440 440 0,3915
Central domain 441 639 200 0,2517
C-terminal 640 728 88 0,9938
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-440
Central
441-639
C-terminal
640-728

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage 4E8
[NCBI] 		3043620 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WJJ57298.1 [NCBI]
Genbank nucleotide accession
OQ689734.1 [NCBI]
CDS location
range 12802 -> 14988
strand +
CDS
ATGTCTAGAGAATTAATGCCCAAATCTGGGATAATGATGCCTCATGTTGTTATTAACCGAGATGCTGCAGTAGTGGGTGTATCTACTGTAGATGGGGCCGCTGGTGCTATCAACTTAACAGAAAAATACCTTCAGAAGTCTGACGCTGAAGCAACCTATCAAACGAAAGCAGAAGGGGCTACTAAGCAATATGTAACCGACGCTATCAACCCCATTATGACAAATGCTCTTTTTAAAGATGACCCCTTTGTTAATAATGACACACCTATTCGCTCTGGCGGTGGTAATGGTGTTGAATCGGTAGATATGATTAAAGTCACCCCTGAGAACACCATCAAACTAGGGAGCTATGCTTCTTCTGTTCAGGGGGTTGAGATTCATTCTGCTGGTCGTCTTCAGGTTGTTGATCAGAACGATTCTGGAGTCGAAACTAAATATCCGGTATACTCCAAAAGATATCGCCCAGAAGTTGAGGATTTACCTTTCGCTTCAATTGGCTCCTATGTTAAAGACTCCAAAGGACGCACAATTGGTGTAACTCGTACTGGTATCAACTCTGATATCAAACAGTTTACGCAGAAGGTAACTTTCCAGCAACCTGTTACTATTCCTGATGCTGTAGGTGATTATGATGCAGTTACACTAAGACAGCTTCGTAACAGTGGTGGAGGTTCTGGTGGTCCTACCATGAGCGGTATCTCCAACTTTGGTATTGGTGATTTCCATCTTCGTGATAGTCGTGCTTTTATCCCAGCTTTTGAAGTGTTATCTGACGGTCAGCTTCTAAATCGTGCAGACTATCCGGACCTGTGGGCTTATGCTCAACTGCTATCCCCAATAACTGATGAGGATTGGCGCTCTTCTATGTATAATAGAGGTAAATATTCCACTGGTGATGGTTCTACTACTTTCCGCGTTCCTGACAGGAATGGTATCCAAAGGAGTGGTGTTAATGGTTTTGTTGGGGAAGACTCTCTGGGAGCGCTGTATGGTCGAGGTGATGGTGGAGCTTCGGCTGCGAACGGTCTGGTATTTGATTCAGCTGCACCAAACATCTACGGCAACATTGGCGGCGTGGTAGCCTATGGGCAGACTGGTGCTATCGTCAGGGGGCAGGAAGAAATGGCTTTGGCACCACAACCCACAACAGGCAATGGTGTTTTAAGAGTAAGTTTGGATGCGTCAAAAGTAAGCCCAATTTATGGTCGGTCAAACAGTGAAATCATGGGTCGTAACTTTGTTGGTGTTTGGACTATTCGCGCTCATGGTGGTTTTACTGCTGCTAATACTTCTTGGTCTGTTATTGATAGTGACTCGACAGAGCCTGCATCCGGAACAGTTGTCAGGGGCGGTAGTGTCAAATCTGAATACAAGATTGGTACAAGCCCAAAATATCAAGCATATCTTCAGGCATATGGGAAAATTGGTGGGTTAGCAATTGACCGAGGTGCAGTTCTATCAAACGGGGTACAGGAGTGGTTCTTTAATCAAGATGGGACTTTGTATTTCCCAGACGCAGAGACGCAAATTGGTACATTAAGGTCTGATGGCGCGTTACATATTAGCGCATACGTCAGGCCAAAGGATATCGTTGTAAATCCATTAAACTCTGTTGGGGTTGCAGCTTCAGAAAGAAACGCCATCAGAATGATCAACTACGCAAATGTACCAGAAGGGGGTTATATTAACTCAGTTGGTGGCGACTGGTACGACGGAACGTGGACCCTCGGTGGGGTTAGGAGTGGTTCAACCTTATTGGACCGTGCACAGCTTAACGTCTATGATGGGCTTAGTGGCAGTGCCTCGTATTTATTCGGTTCTGACGGCATAGCAAGGTGTCAGGAATGGCGAAGCACATCTGACGAACGGATTAAAAGCAATATTGAGCGTATCAGTGATCCACTCTCCAAGATGAAAAACATCAAGGGGGTTACGTGGGTTCTGGAAACCAACGGCTCGGTAGGGTACGGATTCATCGCACAGGACGTAGAGAAGGATTTTCCTGAAGCTGTATCAGAAATAAAGGCTTCACCAGTCACTCTGCGAGACGGGTCTGTGTTGGACAATGTAAAGTCAGTTAACACCTCGGGAGTTGCTGCTGCGTTGCACCATGAAGCTATTCTTGAACTTATGAAGCAGGTTGAAGATCTTAAGAAAGAGGTGTCAGAGCTTAAGTCTAGTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
01ff001cde7c27833e538d14f60e457e7bd2f75c5c73256c437e23409a0f2a65
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5767
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Fabrication of bacteriophage-incorporated nanofibers for food bio-preservation Zeynali,H.S., Barzegar,A., Gholadze,S., Skurnik,M. and Zarrini,G. 2010-02-01 — GenBank