Protein

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Genbank accession
YP_009221635.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MIYKDLLKKVNDIENLKEVDNIKCSTDTGEYTIENSKKGYLTNFNVEGKTLIDLWGKTSSDFSLWKATFVDGKINILTENDIRYSNFFTINYTSYKPDTIYTIIVDVDKNTLPSTSGIYIHSLGEENSVFIPNLTNIAIPGGVIGKFKYTFTTISDLNDCNVVLRSVLDNDTLTSGYEISLKITILEGDYTDINIDYSNELLSVGQRDKIEFLSYQYSGINIFNKNADFKDNYILQYLSGEELISEASNHKYTLDYIEIEPDTEYTFYNCSRNICWYDINKSFITASLNERIIGDKDIFYIARSPKNAKYLRVTIIKDLHDNGNKTIITKGNKYDKKTIPYTLRSLPNGIKDEIVYKNDKYYLIKRCEEHTYTDIGNLNLSHVYDNTLQFMGTLTPQAVVDSLDIAYVLCNNLNGKSRNDFNNNDIEGCSTTGSGDIAFKILKSKLTTQDGNGFSEWIKNNPITIIYQLSKPQEIELTSLNLEQYNNQTKFICNTGIVIPDISFESTQNLGSHIEVIRNNIKNYNVRIDFPFSINFLNGWQPYLGYASSVGNYCTNNNFVTINATINGGVTTAGTIIGKIPSKYAPRKNIIVIFQTTDGKYYNGIIRTNGEIEIYYNDITYRSWLYLYVNYLI
Physico‐chemical
properties
protein length:633 AA
molecular weight: 72290,49230 Da
isoelectric point:5,18107
aromaticity:0,12164
hydropathy:-0,34724

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009221635.1
1 633
Domain Start End Length (AA) Confidence
N-terminal 1 45 45 0,8667
Central domain 46 244 200 0,3205
C-terminal 245 633 388 0,7695
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-45
Central
46-244
C-terminal
245-633

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phiCD211
[NCBI] 		1582152 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009221635.1 [NCBI]
Genbank nucleotide accession
NC_029048.2 [NCBI]
CDS location
range 51750 -> 53651
strand +
CDS
TTGATATATAAAGATTTACTTAAAAAGGTCAATGATATAGAAAATCTCAAGGAGGTTGACAATATAAAATGTAGTACTGATACAGGAGAATATACTATAGAAAATAGTAAAAAGGGCTATTTAACTAATTTTAATGTAGAAGGAAAGACATTAATTGATTTATGGGGAAAAACTAGTTCAGATTTTTCTTTATGGAAAGCAACTTTTGTGGATGGAAAAATAAATATACTAACAGAAAATGATATAAGATATTCTAATTTTTTTACAATCAATTACACTTCATATAAACCAGATACCATATATACAATCATAGTTGATGTTGATAAAAACACTTTACCGAGTACAAGTGGAATATATATTCATAGCTTAGGCGAAGAAAATTCAGTATTTATTCCTAATCTGACAAATATAGCTATACCAGGAGGAGTAATTGGTAAATTTAAATATACATTTACAACAATATCAGACTTAAATGATTGTAATGTTGTTTTAAGGAGTGTTTTAGATAACGATACACTTACATCTGGTTATGAAATAAGTTTGAAAATTACCATATTAGAAGGAGATTATACAGATATTAATATAGATTACTCTAATGAACTATTAAGTGTTGGGCAAAGAGATAAAATAGAATTTTTAAGTTATCAATATAGTGGAATTAATATCTTTAATAAGAATGCCGATTTTAAAGATAATTATATTTTACAATATCTTAGTGGAGAGGAACTTATTTCTGAAGCTAGTAATCATAAATATACCCTAGACTATATAGAAATAGAACCAGATACAGAGTATACTTTTTATAATTGTAGTAGAAATATTTGTTGGTATGATATAAATAAAAGTTTTATAACAGCATCATTAAACGAAAGAATAATAGGAGATAAAGATATTTTTTATATTGCTAGAAGCCCTAAAAATGCAAAGTATCTAAGAGTTACTATAATAAAAGATTTACATGATAATGGGAATAAAACAATTATAACTAAAGGAAATAAATATGATAAAAAGACAATTCCATATACATTAAGAAGTTTACCAAATGGAATAAAAGATGAAATAGTTTATAAAAATGATAAATATTACTTAATAAAAAGATGTGAGGAACATACTTATACTGATATTGGAAATCTTAATTTATCACATGTATATGATAATACTCTGCAATTTATGGGAACATTAACTCCTCAAGCTGTTGTAGATAGTTTAGACATAGCATATGTTTTATGCAATAATTTAAATGGAAAAAGTAGAAATGATTTTAACAATAATGACATAGAGGGATGCTCAACTACTGGTAGTGGTGATATAGCATTTAAAATATTAAAAAGTAAACTTACTACACAAGATGGAAATGGGTTTAGTGAATGGATAAAAAATAATCCAATAACTATTATCTATCAACTTTCAAAACCACAAGAAATTGAATTAACATCACTAAATTTAGAACAATATAATAATCAAACTAAATTTATTTGCAACACAGGTATTGTGATACCAGACATTAGTTTTGAAAGTACACAAAATTTAGGAAGTCATATAGAAGTTATCAGAAATAATATAAAAAATTACAATGTTAGAATTGATTTTCCATTTTCAATAAACTTTCTTAATGGGTGGCAGCCATATCTTGGATATGCTAGTTCTGTTGGAAACTATTGCACAAATAATAACTTTGTAACAATTAATGCAACTATTAATGGAGGTGTTACAACGGCAGGTACTATCATTGGAAAGATACCTTCAAAATATGCACCTCGTAAAAACATAATAGTAATATTTCAAACAACAGATGGAAAGTATTATAACGGAATCATTCGTACAAATGGAGAAATTGAGATATATTATAATGATATAACTTATCGTAGTTGGTTGTATTTATATGTAAACTATTTAATTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e16574e3fce04ea0a276d3f0c4e36469f55009fdd7c8f79427941419081d3f37
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6861
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
High prevalence and genetic diversity of large phiCD211-like prophages in Clostridium difficile Garneau,J.R., Sekulovic,O., Dupuy,B., Soutourina,O., Monot,M. and Fortier,L.C. 2018-02 — GenBank