Protein

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Genbank accession
WCD43993.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MVDKTTPRLGLPVPYLTNPLKIDVGKLTDALTMLDKNAVMLTDWDITSDSWQKMGKISNLAQGKIAITLMVVTGTGFANIVMQTGDGSVTTVGDPARITVTAQTNLGANSATILGGKLVEVAADTYEIWFNIAPSTAPRKWTGLLIAGNGATIDWTHSSGAQPTGGVALNIARSLTDQEIASPTITRDGAVLTAGYAGLMGIKLPYFDFAATGDTITSHVWRVGETMRVKAADAITANGFPATITGAGATAWRIHCEGINEDRTSTVFIFASEGATPTWVYRITRTTTNWSAPRRMYTSDNPPAASEVKAVAQMDGISTVINLNDRILPAHYGVVSLTSAAGAVAANNFPFDEPGQLTVFPFGASGGVTQVYIAKSGRIASRSYDGSVFTDWRKGAQSGVNSDITQLTGLQGPLTLNADAAGDYDAVTLRQLKANSGGSGPTMNGVLNNFVGAVEWWNGSRASLPVGYIPADGQECSQTDPATADLYALVNSGRVVTVTEALWQNSGSADGLRKGENRGAYVKQSSTGKFRVPDLNGAYADGFTPGANFLRGDGGGHFTSEIGGVGAIKYNAAPNITGLIGNSGAGAFAAVNDPQSAVYQGDSFPNNIQPGPVVAGTYNGFKFNASRSNPAYGRGTEVRPNSVVGIWIIRASGAFQSANTNFSVISGDATAPGANTSVLGGMVYSRYTIGGADKLSASLVASGRYATTESSIVGMAVIQAKNEVSGAFQNFIFDTNGDLTVPRYLLANNIKPWTGNALDISALVTCNDLHTAAGGGCGVRAGEQNRVELNNRKSSIPNGWTGWTSYQWCNGFVQTGAVRGASTDLLAYQITLQQNSGGVNKDWAFQANGDITGPLGTVQFNASDIALKDNAEDAKPGALSRIREIVAREFDWKHDGRHDRGYIAQELQKIDPIYTYEVNGVLNVSQNALIADLIESVKTLADEVDRLKA
Physico‐chemical
properties
protein length:949 AA
molecular weight: 99771,24640 Da
isoelectric point:5,58548
aromaticity:0,08114
hydropathy:-0,12792

Domains

Domains [InterPro]
cd19958
STR
316–394
cd19958 DC_2049 DC_0203
DC_0162
STR
386–540
DC_0162 IPR030392
IPR030392
CHP
863–949
IPR030392
WCD43993.1
1 949
Architecture
STR
STR
RBD
STR 316-540 | STR 563-661 | RBD 820-949
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WCD43993.1
1 949
Domain Start End Length (AA) Confidence
N-terminal 1 45 45 0,9853
Central domain 46 244 200 0,5932
C-terminal 245 949 704 0,8432
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-45
Central
46-244
C-terminal
245-949

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage ECML-606-1
[NCBI] 		2910940 No lineage information
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WCD43993.1 [NCBI]
Genbank nucleotide accession
OL631484.1 [NCBI]
CDS location
range 41929 -> 44778
strand -
CDS
ATGGTGGACAAAACTACTCCCCGGCTTGGGCTTCCTGTCCCATACCTGACCAACCCGTTAAAAATTGATGTGGGCAAGCTGACCGATGCTCTGACCATGCTGGATAAAAATGCCGTGATGCTCACTGACTGGGATATCACGTCAGATAGCTGGCAGAAGATGGGCAAGATCTCCAATCTCGCGCAGGGCAAAATTGCCATTACGCTGATGGTGGTGACTGGTACTGGCTTCGCCAACATTGTCATGCAGACAGGCGACGGCTCTGTGACCACTGTCGGTGATCCGGCACGCATCACCGTTACTGCTCAGACCAATCTTGGCGCGAATTCAGCGACCATCCTTGGCGGTAAGCTGGTGGAGGTCGCAGCCGACACCTATGAGATCTGGTTTAACATCGCACCGAGCACTGCACCGCGCAAATGGACTGGCCTACTGATCGCGGGTAACGGTGCAACAATCGACTGGACACACAGCAGCGGTGCTCAGCCGACCGGAGGCGTAGCGCTGAATATCGCCCGCTCCCTGACCGATCAGGAGATCGCCAGTCCAACCATCACCCGCGACGGGGCGGTGCTCACAGCGGGTTATGCTGGACTTATGGGCATCAAACTGCCTTACTTCGACTTCGCTGCCACCGGAGACACGATCACCTCGCACGTTTGGCGCGTAGGTGAAACTATGCGCGTGAAGGCCGCCGATGCGATTACTGCCAATGGCTTCCCGGCGACCATCACTGGCGCTGGTGCTACAGCGTGGCGCATCCACTGTGAGGGCATCAACGAGGATCGCACATCGACTGTCTTCATCTTCGCGTCTGAGGGCGCGACGCCAACGTGGGTTTATCGCATCACGCGCACGACGACCAACTGGAGCGCACCACGCCGGATGTATACCAGCGATAACCCGCCTGCGGCATCCGAAGTGAAAGCCGTCGCCCAGATGGATGGCATTTCAACGGTTATCAACCTGAATGACCGCATTCTCCCGGCGCATTATGGCGTGGTATCTCTGACCAGTGCTGCTGGTGCTGTTGCAGCCAACAACTTCCCGTTTGATGAGCCCGGTCAGCTGACTGTATTCCCGTTCGGCGCATCTGGTGGCGTCACTCAGGTTTACATCGCTAAAAGTGGGCGTATTGCTTCGCGCAGCTATGATGGCAGCGTATTCACCGACTGGAGAAAAGGGGCACAGTCTGGTGTTAATAGTGACATCACCCAGCTGACAGGTCTGCAAGGCCCGCTTACGCTGAATGCCGACGCAGCAGGAGATTATGACGCAGTTACGCTGCGCCAGCTGAAAGCAAACTCAGGCGGCTCTGGCCCAACGATGAATGGCGTGCTTAATAACTTTGTTGGCGCGGTGGAATGGTGGAACGGATCGCGTGCCAGCTTACCCGTTGGATATATCCCCGCCGACGGTCAGGAATGCAGCCAAACAGATCCTGCAACCGCAGATCTGTATGCTTTGGTGAATTCTGGCAGGGTTGTCACGGTAACGGAAGCCCTTTGGCAAAACAGCGGTAGCGCTGACGGTCTGCGGAAAGGTGAAAACCGAGGCGCATATGTTAAGCAATCAAGTACAGGGAAATTCCGTGTGCCTGATCTTAATGGCGCATACGCTGATGGATTTACTCCGGGGGCTAACTTCCTGCGTGGTGATGGTGGTGGTCATTTTACTAGCGAGATCGGCGGCGTAGGCGCGATTAAATACAACGCCGCGCCGAATATTACGGGTCTTATCGGCAACTCAGGTGCTGGTGCATTCGCGGCGGTTAACGACCCTCAAAGCGCCGTTTATCAAGGGGACTCATTCCCTAACAATATTCAACCCGGTCCAGTTGTAGCGGGAACCTATAACGGGTTTAAATTTAATGCTAGCCGATCTAACCCCGCGTATGGACGTGGTACTGAGGTGCGCCCGAACTCGGTTGTGGGCATCTGGATCATCCGAGCCTCTGGTGCCTTCCAGTCAGCGAACACCAATTTCAGCGTGATCTCTGGTGATGCTACCGCGCCGGGTGCTAATACGAGCGTGCTGGGCGGGATGGTCTATTCCCGCTATACCATCGGTGGCGCGGATAAACTTTCGGCCTCGCTGGTAGCCAGCGGAAGATATGCCACCACTGAATCATCTATCGTGGGCATGGCTGTCATTCAGGCAAAAAATGAGGTTTCCGGGGCCTTCCAAAACTTCATCTTTGATACCAATGGTGACTTGACGGTGCCACGTTATTTGCTGGCGAATAACATCAAGCCATGGACAGGAAACGCGCTGGATATCTCCGCGCTCGTCACCTGTAATGATCTGCATACCGCTGCGGGTGGTGGTTGTGGGGTGCGAGCAGGTGAGCAAAACAGAGTCGAGCTCAATAACAGAAAGAGCAGCATCCCGAATGGTTGGACGGGATGGACAAGCTACCAATGGTGTAATGGCTTTGTTCAGACTGGCGCTGTCCGAGGAGCCAGTACGGATCTTCTCGCTTACCAAATCACCCTCCAGCAAAACTCAGGAGGGGTAAATAAAGACTGGGCTTTCCAAGCTAACGGTGATATTACCGGGCCTTTGGGCACAGTTCAGTTTAATGCCTCCGATATCGCGCTGAAAGATAATGCGGAGGATGCCAAGCCGGGCGCACTGTCTCGCATCCGTGAGATTGTTGCGCGGGAATTCGACTGGAAGCATGACGGACGCCATGACCGTGGCTACATCGCGCAGGAGCTCCAGAAGATTGACCCGATCTATACCTATGAGGTTAACGGGGTGCTGAACGTGTCTCAAAACGCGCTCATCGCAGACCTGATCGAATCCGTCAAAACGCTGGCGGATGAAGTAGACCGACTCAAAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4d0e427b10b95586f89fe2e9199176ebe2e51a8465a37544fdea505b0a99f740
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6374
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Virulent bacteriophages provide an effective reduction of big-seven Shiga-toxin producing Escherichia coli on various foods Vikram,A., Woolston,J., Hickey,S. and Sulakvelidze,A. 2023-09 — GenBank