Protein

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Genbank accession
QBQ72720.1 [GenBank]
Protein name
putative structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MANVKISDLTGAASASGTQEFEVNDSGTSKKVTGTQLATFIEGEVSSSPTLTGQVSLDNGTNTAPSLTNTGDTNTGLYFPSDDTVGLAAGGGLKLSANASGIDVTGTVTADGLTVDGTDLAVSFNGSSKTFVYLTEGDTTDLNTKIYQSGGNFGIQTISDNLATSKNRLKVDHSTGDISFYEDTGTTPKFFWDASAESLGIGGAPDVWDTFNAVQANNISLAGYSTTQGGVIQNAYYAGGWKYSSTNPASMYYQDSGTHQFHTAASGTANTALSWSQKMTIDSSGNVGIGTGSPDIFGRGHTRLLGISTSSGNSMIQLNGASGAYSGLELGANSVRYGTITGGATDVSIGTNAAIPLVYYTNNTERMRINSSGNVGIGTSSAAYPLTVNGYIGVRGGNGITFLNPSNNYTSDIYNGAASGTSDLRFKTQATERMRIDSSGNLLVGTTDKNIRDSSTAEGMVYRNGDSLDINRSAAPPLIMNRVGNSDGDIALFRKDGSTVGSLSTQYSGLNIDGAASRSGIYFGTSGLTPRFNGAQADNTIDVGTASQRFDDIYATNGTIQTSDRNEKQDIEVLSDAETRVAQACKGLLRKFRWKDAVAEKGDDARIHFGIIAQDLQDAFTAEGLDAGRYAMFISSTWWETQTDVPAVEAVEAVEATYDEDGNELTPAVEAVEAKEAYTRTDTYETLEEAPEGATERTRLGVRYPELLAFIIAAI
Physico‐chemical
properties
protein length:715 AA
molecular weight: 75017,88420 Da
isoelectric point:4,47348
aromaticity:0,07972
hydropathy:-0,32685

Domains

Domains [InterPro]
DC_1301
ATT
1–40
DC_1301 DC_1815 IPR036388
DC_0783
STR
351–652
DC_0783
IPR030392
CHP
563–624
IPR030392
IPR030392
CHP
563–715
IPR030392
cd10144
CHP
563–715
cd10144
QBQ72720.1
1 715
Architecture
ATT
STR
RBD
ATT 1-40 | STR 205-652 | RBD 653-715
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBQ72720.1
1 715
Domain Start End Length (AA) Confidence
N-terminal 1 44 44 0,7631
Central domain 45 243 200 0,1981
C-terminal 244 715 471 0,8820
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-44
Central
45-243
C-terminal
244-715

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage CRP-5
[NCBI] 		2559284 Uroviricota > Caudoviricetes > Zobellviridae > Veravirus >
Host Rhodobacteraceae bacterium
[NCBI] 		1904441 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBQ72720.1 [NCBI]
Genbank nucleotide accession
MK613347 [NCBI]
CDS location
range 34517 -> 36664
strand -
CDS
ATGGCTAATGTAAAAATATCTGATCTAACTGGTGCAGCTTCTGCTTCTGGTACTCAAGAGTTTGAGGTAAATGACAGCGGTACATCCAAGAAGGTAACAGGCACTCAGCTTGCTACTTTCATTGAGGGAGAGGTGTCATCCAGCCCTACCCTTACAGGTCAGGTGTCATTAGACAATGGCACTAACACAGCGCCCTCCCTAACGAACACAGGGGATACCAATACAGGCCTGTACTTCCCTTCTGATGATACAGTAGGTCTTGCTGCTGGTGGTGGCTTAAAGTTGAGTGCTAACGCCTCAGGTATTGACGTAACTGGCACTGTCACGGCTGATGGGCTGACTGTGGATGGAACAGATTTAGCAGTATCATTTAATGGTAGTTCCAAGACGTTTGTGTATTTAACTGAAGGCGACACTACTGACTTGAATACAAAGATATACCAGTCAGGTGGTAACTTTGGTATTCAAACAATTAGTGATAATCTTGCTACTTCCAAAAACCGTCTTAAAGTAGACCATTCCACAGGCGACATCAGCTTCTACGAGGACACAGGCACAACGCCAAAGTTCTTCTGGGATGCGAGTGCGGAGAGCTTGGGGATTGGTGGTGCGCCTGATGTTTGGGACACTTTTAATGCAGTTCAAGCAAATAATATTTCTCTTGCTGGTTATTCTACAACCCAAGGCGGTGTAATTCAGAACGCTTATTATGCGGGTGGTTGGAAATATTCATCTACGAACCCTGCGTCTATGTATTATCAAGATAGCGGCACTCATCAATTCCATACAGCAGCTTCCGGCACAGCAAATACCGCACTTTCTTGGTCACAAAAAATGACAATCGACAGCAGCGGTAATGTCGGGATTGGCACGGGTAGTCCAGATATATTTGGACGTGGGCATACAAGACTGTTAGGCATCTCGACCTCCTCGGGCAATTCAATGATTCAGTTAAACGGTGCGTCTGGTGCGTATAGTGGTCTTGAATTAGGAGCTAATAGTGTTCGCTATGGGACAATAACTGGTGGAGCTACAGATGTAAGCATAGGCACAAATGCGGCTATTCCTTTGGTTTACTATACCAACAACACAGAACGTATGCGCATCAACAGCAGCGGTAATGTTGGCATTGGGACGAGTAGTGCTGCTTATCCTTTAACGGTTAATGGGTACATAGGTGTTCGTGGCGGTAACGGGATTACATTCTTAAACCCATCAAACAACTACACATCTGACATTTATAATGGTGCGGCTTCAGGGACATCTGACCTGCGCTTTAAAACACAAGCCACAGAACGTATGCGCATCGACAGCAGCGGTAATCTGTTGGTGGGGACTACTGATAAAAACATTCGTGATAGTTCGACTGCGGAAGGTATGGTGTATCGTAATGGCGATAGCTTAGATATTAACCGTAGTGCGGCACCACCTCTTATCATGAACCGTGTAGGCAATTCGGATGGCGACATTGCTTTGTTCCGCAAAGACGGCTCCACGGTGGGGAGCCTTTCAACTCAATACTCAGGATTAAACATTGATGGTGCTGCTAGTCGTTCTGGAATTTACTTTGGGACTTCTGGTTTAACTCCCCGTTTTAATGGCGCACAAGCAGATAATACAATTGACGTGGGGACTGCTTCTCAACGCTTCGATGACATCTACGCCACCAACGGCACCATCCAAACGTCTGACCGCAACGAGAAGCAAGACATCGAAGTTCTCTCTGATGCTGAAACTCGTGTAGCACAGGCTTGCAAGGGTCTACTCCGCAAGTTCCGCTGGAAGGATGCTGTAGCTGAAAAGGGTGACGATGCCCGTATCCACTTCGGTATCATCGCACAGGACTTGCAGGATGCTTTCACTGCTGAGGGCTTGGACGCTGGTCGTTACGCCATGTTTATCTCTAGCACTTGGTGGGAGACACAGACTGATGTGCCTGCTGTAGAGGCTGTGGAGGCTGTTGAGGCTACCTACGATGAGGATGGCAACGAGCTTACACCTGCTGTCGAAGCCGTAGAAGCCAAGGAAGCCTACACTCGCACAGACACTTATGAGACACTTGAGGAAGCACCAGAGGGAGCAACAGAACGCACCCGCCTTGGTGTCCGATACCCTGAGCTTCTCGCATTTATTATAGCTGCAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
72114a2ecf4bed4e24d838f5fbc2a9306144c9927081f3d58ff7799b9ab7927b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7312
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse, abundant and novel viruses infecting the marine abundant Roseobacter RCA lineage Zhang,Z.F., Chen,F., Chu,X., Zhang,H., Luo,H.W., Zhai,Z.Q., Yang,M.Y. and Zhao,Y.L. 2019 — GenBank