Protein

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Genbank accession
AGM14081.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,75
Protein sequence
MAWTNLISAIEAVITANGSNEITGTILKDLLVNNIVPQLGAAEFKGFAETSTDPGTPQSDVFYIAKSDGVYSNFGGIEISSEFAFIAYQSTTWSKFSIGDSIESFTTKNPSGNLYPKGSFEAGYLLTTVGATQGNLASAAGWYRSLPLEVLENTEYTAYGSPRLDVLAYSALPLNSANCLGVVTKSAAIGGGEKFTTPVNTAYLGFNLMDSGDSGTPESAFDGTFVLVVGDTNVGYVPHSRILDSSENAKNPIVVRSEDLIGLIQSVQIAQAAKDELKYNPLTPIVQKNAFTDNYGGVDFTSQQITSNKPVSNTVSNTLKRTAGGLLPTPVGFEGKLVLSANPGDIYAPVLNYKITPEMLQEIGINVLDPNYDDNNPQKISLRSGWLRDFTGGVTGVQQFVNILYGNDPLSYTSYELNGSNALISTTGNFYGNLVNANPGKNFNATSITNESETGYNVRSYNEIPLYKELDLSGTTKTFTGILVSVLPQSVDVAELERKITGFGFAIANAADFPTVSLATNLVNTNEDFTTPPFNIGDAQDVDDTTKTNGDVLAWDASLQKYVPVESNTEINTITFKNSEKIAFYGCSFTESYYAVKNKSWVNKLAQMTDYICANFGVSGNRLVDESKRLLQNSNPYHGTIGIKELNPTYISFANIGNETLHSGGANNLDLYKAQMIEAIQAVYSVGATPIMGTDHNIYNAAIDSLLYDVAKQFNSLYWGIGTIGEKIVNNGILAFWGGGHPATRTNAHQFLEWLYFISQLPRPKRAIKVFRVREEYKNGSPVIADLNYDDITQRVKFWQEINSGEKSLKEANGQNGWEYYDRLNEAFAADTITNEYCKFINKEDVSFNKFGLFEFIIDKVNPTALKIYVKTASTDLDFYIKDNNNPLDYKDTLRNQAAFEVTKTVYDAFNEAVDTAFTSDAHGATELNYKGKSKSEALGGYWLFFYLTSGSATAGGAGNLTKVSGGGNTAYLQSSYNLGRHSYDFFSTVGKPQMRMVPVASTYENGHAVITLNPSDAKYLDFDKVKLVVADTGTFDISDAYIEVTGGTDKPVFQKDVKPKLNGTELNTDTSFGTDWITGNGWVNEGATQEQMPSGLRDYPTINSELRHIKLDFNTDMFPQKIKKSFTYPYSRAYTKVTVKAVVRLFPKVFNTTVPTDNYHTATRQIKADSYDMGTLCLGIDVGRNRPAVLKKLVDIGWAEVTFETYLPPFSTTFEVSLWRDEQDLIDSNYRNHEYPMQLHDVSVQIN
Physico‐chemical
properties
protein length:1248 AA
molecular weight: 137148,39200 Da
isoelectric point:4,91154
aromaticity:0,11378
hydropathy:-0,28662

Domains

Domains [InterPro]
DC_1005
STR
1–835
DC_1005
IPR036514
STR
563–723
IPR036514 DC_1650
SSF52266
STR
579–743
SSF52266
AGM14081.1
1 1248
Architecture
STR
RBD
STR 1-835 | RBD 836-1248
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGM14081.1
1 1248
Domain Start End Length (AA) Confidence
N-terminal 1 157 157 0,7311
Central domain 158 420 264 0,5265
C-terminal 421 1248 827 0,4595
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-157
Central
158-420
C-terminal
421-1248

Taxonomy

  Name Taxonomy ID Lineage
Phage Croceibacter phage P2559Y
[NCBI] 		1327037 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Croceibacter atlanticus HTCC2559
[NCBI] 		216432 Bacteria > Bacteroidetes > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Croceibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGM14081.1 [NCBI]
Genbank nucleotide accession
KC688701.1 [NCBI]
CDS location
range 17810 -> 21556
strand +
CDS
ATGGCTTGGACGAATTTAATATCTGCAATAGAGGCCGTTATAACTGCCAACGGCAGTAATGAAATAACGGGAACTATTTTAAAAGACCTTTTGGTAAACAACATAGTTCCACAATTAGGTGCGGCAGAATTTAAAGGATTTGCCGAAACATCAACCGACCCCGGAACACCTCAAAGTGATGTTTTTTATATCGCTAAATCTGACGGTGTTTACAGTAATTTCGGAGGTATCGAGATTAGTTCGGAGTTTGCTTTTATAGCTTATCAGAGTACTACGTGGTCTAAATTCAGTATCGGAGACAGTATCGAAAGTTTTACAACTAAGAACCCTTCAGGGAATTTATACCCCAAAGGATCTTTTGAGGCTGGATATTTATTAACAACCGTCGGAGCTACACAAGGGAATTTAGCAAGTGCCGCGGGGTGGTATAGGTCTTTACCTTTAGAGGTTTTGGAAAACACAGAATATACAGCCTACGGGTCGCCGAGACTCGACGTTTTGGCATATTCCGCACTACCTTTAAATAGTGCAAATTGTTTAGGTGTGGTAACTAAGTCGGCGGCAATAGGTGGTGGCGAAAAATTTACGACACCCGTTAATACTGCATATTTAGGTTTTAACCTTATGGATTCTGGCGACTCTGGTACTCCTGAAAGTGCGTTCGATGGAACTTTTGTTCTGGTAGTTGGAGACACTAACGTCGGATATGTTCCACACAGTAGGATTTTAGACAGTTCCGAAAATGCGAAAAACCCAATAGTTGTAAGGTCTGAGGACTTAATCGGATTAATACAATCCGTGCAAATAGCACAGGCCGCAAAAGACGAATTAAAATACAATCCGTTAACTCCTATCGTTCAAAAAAACGCTTTTACTGATAATTACGGAGGTGTCGATTTTACTTCTCAACAAATAACCTCAAATAAACCCGTATCGAATACGGTATCAAATACTTTAAAAAGGACTGCGGGCGGTTTATTACCTACACCAGTAGGTTTTGAAGGTAAATTGGTTTTGTCTGCAAACCCAGGCGATATTTACGCACCAGTTTTAAATTACAAGATAACTCCTGAAATGTTACAGGAAATCGGAATCAATGTTTTAGATCCGAATTATGACGACAACAACCCTCAAAAAATATCCTTACGATCAGGTTGGTTAAGAGATTTTACAGGAGGTGTAACTGGTGTACAACAATTCGTAAATATTCTATACGGCAATGACCCTTTGAGTTATACAAGTTACGAACTGAATGGTAGTAATGCGTTAATATCTACAACGGGTAATTTTTACGGTAATTTAGTAAATGCAAATCCGGGTAAAAACTTTAACGCTACATCGATTACAAATGAGTCAGAAACAGGGTACAATGTACGTTCGTATAACGAAATCCCACTCTATAAAGAATTAGATTTGTCGGGCACAACTAAAACGTTTACGGGTATTTTAGTTAGTGTTTTACCTCAATCGGTTGACGTTGCGGAATTAGAGAGAAAAATAACAGGGTTCGGATTTGCTATTGCAAACGCTGCGGACTTTCCAACTGTTAGTCTGGCAACAAATCTTGTAAACACAAACGAAGATTTTACGACTCCACCTTTTAACATTGGCGACGCTCAGGATGTGGACGACACCACCAAAACCAATGGAGACGTTTTGGCTTGGGATGCAAGTTTACAAAAATATGTACCCGTTGAAAGTAATACCGAGATAAACACGATAACGTTTAAAAACTCCGAGAAAATAGCTTTTTACGGATGTTCTTTTACAGAGTCTTATTATGCAGTAAAAAATAAAAGTTGGGTTAATAAACTAGCTCAAATGACTGATTACATTTGTGCAAATTTCGGTGTGTCTGGGAATAGGCTTGTTGACGAAAGTAAAAGACTTTTACAAAATTCAAATCCTTACCATGGTACTATCGGTATAAAAGAATTAAACCCGACTTATATTTCATTTGCAAATATAGGTAACGAGACTTTACACTCTGGGGGTGCTAATAATTTGGATTTATATAAAGCCCAAATGATTGAAGCTATACAGGCCGTGTATTCAGTCGGTGCGACTCCGATAATGGGTACAGACCACAATATCTATAACGCTGCGATTGATAGTCTTTTATACGATGTAGCAAAACAATTCAACTCGTTGTATTGGGGTATTGGTACTATTGGCGAAAAAATAGTAAACAACGGTATTTTAGCGTTTTGGGGTGGAGGACATCCCGCGACGAGAACAAACGCACATCAATTTTTGGAGTGGTTGTATTTTATTTCACAATTACCAAGGCCAAAAAGAGCAATAAAAGTTTTTAGAGTGCGAGAGGAATACAAAAACGGTTCGCCAGTAATTGCAGATTTAAACTATGACGATATAACTCAAAGGGTTAAATTTTGGCAAGAGATTAACTCAGGCGAAAAATCTCTAAAAGAGGCGAACGGTCAAAACGGTTGGGAATATTACGACAGATTAAACGAGGCTTTCGCCGCTGACACGATTACTAACGAGTATTGTAAATTTATCAATAAAGAGGACGTTTCTTTTAATAAATTTGGATTGTTCGAGTTTATAATCGACAAAGTAAATCCAACAGCTTTAAAAATATATGTAAAAACCGCGTCAACAGACTTGGACTTTTACATAAAAGACAATAACAATCCTTTGGATTATAAAGATACTTTGAGAAATCAAGCAGCTTTTGAAGTTACAAAAACTGTTTACGATGCTTTCAATGAGGCCGTAGATACTGCCTTTACTTCTGACGCACATGGAGCAACAGAATTGAACTACAAAGGAAAATCGAAAAGCGAAGCCCTTGGGGGTTATTGGTTATTCTTTTACTTAACTTCTGGTAGTGCAACCGCTGGAGGGGCTGGAAACCTTACAAAAGTTTCTGGGGGTGGTAATACCGCGTATTTACAAAGTAGTTATAATTTGGGTCGTCATTCTTACGATTTTTTCTCTACCGTAGGTAAACCACAAATGAGAATGGTACCGGTTGCCTCTACTTATGAAAACGGACACGCCGTAATAACTTTAAATCCTTCAGATGCTAAATACTTGGACTTTGATAAAGTTAAATTAGTTGTTGCAGATACAGGAACTTTCGACATTTCGGACGCATACATCGAAGTAACTGGAGGTACTGATAAACCAGTATTTCAAAAAGATGTTAAACCAAAATTAAACGGTACAGAATTGAATACCGACACATCATTCGGTACGGACTGGATTACTGGTAATGGGTGGGTAAACGAGGGCGCAACTCAGGAACAAATGCCGTCAGGGTTGAGAGATTACCCAACCATAAACAGCGAACTAAGGCATATTAAATTGGATTTTAATACTGATATGTTCCCTCAGAAAATAAAAAAATCATTTACATACCCATACAGCAGGGCATATACAAAGGTAACAGTTAAAGCCGTTGTTCGATTGTTCCCTAAAGTTTTTAATACAACAGTCCCAACAGATAACTACCATACAGCCACAAGACAAATAAAAGCGGATAGTTACGACATGGGTACTCTATGTTTAGGAATAGACGTTGGCAGAAATAGGCCGGCAGTGTTAAAAAAATTAGTTGACATCGGTTGGGCTGAGGTAACTTTCGAGACATATTTACCGCCTTTTTCAACGACTTTTGAGGTATCTTTATGGCGAGACGAGCAAGATTTAATCGACAGTAATTATAGAAATCACGAATACCCTATGCAGTTACATGACGTATCTGTACAAATAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
739f6e97820c235748b876132cea2c7dcf8856d2b960b6a26b3757bd51479013
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4301
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and genome analysis of bacteriophage infecting marine bacterium Croceibacter atlanticus HTCC2559 Cho,J.-C. 2016-10 — GenBank