Protein

View in Explore
Genbank accession
WKC56051.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MAITPDQLGVFKPKFNNAVSTNGGIATLSQLATGVRNSIFSDLANDSSLAGNTEVRKVFIKQNLQALDASAYGDAHVFMKDIGDSDIKFLLGYGTETDSGTNPTLDIMVGRVVNVGASYVDVETTLVKTGVITITRFRPSTGSVIEVADASANASGNYCRLTNVQTSSFSVGDVITEKKVFELPTFDDKTNLKPRARDLSVSSEGTFNLSLVSFAPRAAVTGVVSLELISSSSYSWNIPELNINGVASLTEDLNVYHPETSAQTNAALVLKIPSSAFEGVWASGNTVSFTIVSGSIPVWLKRVVSDNPNVAGTQSVNFGIKYQTS
Physico‐chemical
properties
protein length:325 AA
molecular weight: 34469,23730 Da
isoelectric point:5,03283
aromaticity:0,07692
hydropathy:0,03877

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage CAU_VPP01
[NCBI] 		3061015 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKC56051.1 [NCBI]
Genbank nucleotide accession
OQ858564.1 [NCBI]
CDS location
range 29023 -> 30000
strand +
CDS
ATGGCAATCACACCGGATCAATTAGGCGTTTTTAAACCTAAATTTAATAACGCGGTGAGCACAAACGGGGGCATAGCTACACTAAGCCAGCTAGCGACAGGGGTACGCAACTCTATTTTTTCTGATTTAGCTAACGACAGTTCGCTGGCTGGTAACACTGAAGTCCGAAAAGTTTTTATTAAGCAGAACTTACAGGCGTTAGACGCCTCCGCGTATGGTGACGCGCATGTTTTCATGAAAGACATAGGCGATAGTGATATTAAGTTTTTACTAGGCTACGGGACAGAAACCGATAGCGGTACTAACCCAACACTAGACATTATGGTTGGTCGTGTCGTTAACGTCGGGGCGTCCTATGTTGATGTTGAAACCACACTAGTGAAAACGGGGGTTATTACTATAACCCGTTTCCGCCCGAGCACCGGATCAGTTATCGAGGTGGCAGACGCTAGCGCGAACGCCTCCGGCAACTATTGCCGCCTAACGAACGTGCAAACTAGCTCTTTTAGTGTGGGCGACGTCATTACTGAAAAGAAAGTTTTTGAGCTTCCTACCTTCGACGACAAAACCAACCTAAAACCACGGGCGCGAGACCTTAGCGTAAGTTCGGAGGGTACGTTTAACCTAAGTCTAGTTAGCTTTGCCCCACGCGCCGCCGTGACGGGCGTCGTAAGCTTAGAGTTAATAAGTAGTTCGTCATATAGCTGGAACATCCCAGAACTGAACATTAACGGGGTGGCGTCACTAACTGAAGACCTCAACGTTTACCACCCTGAAACAAGCGCGCAGACGAACGCGGCACTAGTATTAAAGATCCCGTCATCGGCTTTCGAGGGGGTGTGGGCTTCCGGTAATACCGTTAGCTTTACGATTGTATCCGGTTCAATCCCAGTGTGGCTAAAGCGCGTCGTTTCGGATAACCCTAACGTCGCTGGCACACAATCGGTTAACTTTGGTATTAAGTATCAGACTAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f2b1261f68153224edf3259433b7473ec1a5176eb4c42497ac7abbe0b6b7c517
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8615
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization, and application of bacteriophage on Vibrio parahaemolyticus cocktail biofilm to inhibit seafood contamination Kim,B., Ha,S., Byun,K., Choi,M. and Ashrafudoulla,M. 2024-07 — GenBank