Protein

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Genbank accession
BBL19307.1 [GenBank]
Protein name
tail fiber family protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,83
Protein sequence
MRVDNLQAETTITEQGERVYSPNNKPSASDIGALPAGGKAANSARADTVTNTNLGTTATSYYNITSTSWYGDAPIGKSQMVRGTSVGLPIAEPGFLYKLGARDVLKGHGWMFITDYAGKASRVFFGAQEDGSKAPIWTEVYSPNHKPTAADVGAHPNSWRPTWNDVSSKPAQATRWPKWGEISDRPGTMPPSSHTHPWSQITGIPSYATRWPNWGEISGKPGNLLTQTTADTRYLGKNAKATDSDKLDGLDSSAFQRVVTVSGSVKSGKWYTVASGSSRCAAEFIIGDPQSGRHGYTRFFAGISYGNGPILNVLGSTGFSSGKGVLRHIRIVDKSSDRTYGAKEVQVYVDGDSTISVYMNDDYSPFNGWGLVKPKEASGTNIQRVTLDLDKTNGFMSTDHMYVGSNRVYHQGYKPTAADVGAMTQSQGDGRYVRFDYSGNTSYPRLVPAKGDWLRSPAAGFLPDSNGGASLGTSSWRWSQIWGNAIYDSGHRVFHDGRRPTAAQVGAEPTLAGDRKRKISYGTGNPSGGSDGDVYIQYK
Physico‐chemical
properties
protein length:539 AA
molecular weight: 58146,54880 Da
isoelectric point:9,26909
aromaticity:0,10390
hydropathy:-0,59814

Domains

Domains [InterPro]
DC_1002
STR
16–290
DC_1002 DC_1142
BBL19307.1
1 539
Architecture
STR
STR
STR 16-290 | STR 326-435 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BBL19307.1
1 539
Domain Start End Length (AA) Confidence
N-terminal 1 303 303 0,5213
Central domain 304 502 200 0,4037
C-terminal 503 539 36 0,9923
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-303
Central
304-502
C-terminal
503-539

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage KIT04
[NCBI] 		2508207 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BBL19307.1 [NCBI]
Genbank nucleotide accession
LC487410.1 [NCBI]
CDS location
range 83712 -> 85331
strand -
CDS
ATGCGCGTTGATAATTTACAAGCAGAAACAACTATAACAGAACAGGGGGAGAGAGTATACTCTCCCAATAATAAACCAAGTGCCTCAGATATTGGGGCACTACCTGCTGGAGGCAAGGCAGCTAATTCAGCAAGAGCAGATACAGTGACTAATACCAACTTAGGTACTACTGCTACTTCTTATTACAATATAACTAGCACTAGTTGGTATGGTGATGCCCCTATTGGTAAATCCCAAATGGTCAGGGGTACTAGTGTTGGTTTACCGATTGCAGAACCTGGCTTTTTATATAAGCTTGGGGCTAGAGACGTGTTGAAAGGGCACGGATGGATGTTTATTACTGACTATGCAGGCAAAGCATCCAGAGTATTTTTTGGAGCACAAGAGGATGGATCTAAGGCGCCTATTTGGACAGAAGTATATAGCCCAAATCATAAACCAACAGCAGCCGACGTAGGTGCACATCCTAATTCTTGGAGACCCACATGGAATGATGTGTCTAGTAAACCAGCACAGGCTACACGTTGGCCAAAATGGGGTGAGATTAGTGATAGACCTGGTACTATGCCACCTAGTTCACATACCCACCCATGGTCACAAATAACAGGTATTCCTAGTTATGCAACACGTTGGCCAAATTGGGGTGAGATCTCCGGTAAACCAGGTAATTTACTAACGCAGACCACTGCGGATACTCGTTATCTAGGTAAGAATGCTAAAGCTACTGACTCGGATAAGTTGGATGGATTAGATTCTAGTGCTTTTCAACGAGTTGTCACTGTAAGTGGTAGCGTAAAATCTGGTAAATGGTATACGGTAGCTAGCGGTAGTAGTCGTTGTGCTGCAGAGTTCATTATTGGGGACCCTCAAAGTGGTAGGCATGGATATACTAGATTTTTTGCAGGTATATCTTATGGTAACGGTCCTATCCTCAATGTATTGGGAAGTACTGGGTTCTCTAGTGGCAAAGGTGTACTAAGACATATACGGATCGTAGATAAAAGCTCTGACAGAACATATGGTGCCAAAGAAGTTCAGGTATACGTAGACGGTGATAGTACTATATCAGTTTATATGAACGATGACTACTCTCCCTTTAATGGGTGGGGTTTAGTTAAACCAAAAGAAGCTTCTGGTACGAACATACAAAGAGTTACACTTGATTTAGATAAGACTAATGGTTTTATGAGTACAGACCATATGTATGTTGGTAGTAATAGAGTCTACCATCAGGGATACAAGCCTACAGCAGCCGACGTAGGGGCTATGACTCAATCTCAAGGAGATGGTAGATATGTAAGATTCGATTACTCAGGTAATACAAGCTACCCTAGGCTAGTACCTGCTAAGGGGGATTGGTTGCGGTCTCCTGCTGCAGGTTTCTTGCCGGACAGTAATGGTGGTGCATCTCTAGGTACTTCTAGTTGGCGTTGGTCACAGATCTGGGGTAACGCTATATATGATTCAGGGCACCGTGTATTTCATGATGGTCGTAGACCCACTGCAGCACAAGTAGGAGCGGAGCCTACGCTAGCGGGAGATAGAAAACGTAAAATTTCTTACGGTACAGGCAATCCTAGTGGGGGTTCTGACGGTGATGTTTATATTCAATACAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0ed32df170abcb267d8a7439ae8fa0ef485aad6d71ddf37dbfab0aa225f9dcc7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6797
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Vibrio parahaemolyticus bacteriophage KIT04 Vo,T.T.A., Pham-Khanh,N.H. and Kamei,K. 2023-02 — GenBank