Protein

View in Explore
Genbank accession
ARB10879.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGGGKASTPKLLDDNLKSKQFYRVLDLISEGPIFGPVDQEHLSSFKLNKTPVTDANGNVSVNGVSVAWRPGSDSQLPINGFSAIEATTIVNTEVTYDTPLVRTITDQDVTRVRFNVGVTGLVERDTKGNQNNTSVTMVLESRTGASGWVIEKTVTITGKISGEYLEAHLIDAPDIKPFDIRVRRITPDSSSDLLSNGTIWNSYSEITDDNLSYPFSAIAGAVIDRDQYTDTPSRTYHLRGLIVDVPDNYDPIARIYSGLWTGGFKKAWTNNPAWLFRELARNTRFGLAKRAGYIDIDDGALYVLSQYCDQLVNDGYGGQEPRMTLNAYITEQVSARDILDKIASMFRGIALWDGMRLSVMLDAPQDPIATITNANVVDGEFKRSSVKRSEKYNAVVVSWTDPDNGWEQVKEYVSDDEMIARGNYNETTIEAFGCTSRGQAWRAGKWLLETAKRESSRLSFQMARDAIHFTPGDIVEIMDNNYAGARLGGRIMSHAGNRITVDAVDSSLISDGDTMSIMGSNGKFVKYEIGSISGNVVTLKTTPAWVRDGTVFAISTSNVSTRLFRILSIAETDNNSVYSITASQHDPNKQAIVDEGAVFEVPNDTLNGYRVPNVENLRIINTNSETVQVTATWETVTTTKKLMFELYVYNDEGKVVAQYETDQFRYDFYGLEAGSYTLGVRGRNENGMKGAETQVNMVIGAPPAPSGVVWTPGLFSADLVPVMRITATTDTSFEFWYSGQNQIVNPDDIEDQAQFLGRSNQWTLHGLQADKTYYVYVRTKNAFGVSEFVEASGQASSDIPGMIELIDEQIRESDAFKNVQQGVNTNLDGIMSNALAIHGTVEHQYQQYGEVRADILVVKTTVATAEQGLADLSTYVQAQIGPEGELTSAVNQKMTAEVNSDGTAKASYTLNMGIVRNGVKYNTGFGMSIEPDGSSYKSTVVFAADQFGIYSGSDPGNYTAAFFVYNGQVFIRDALIQDGSISNAKIGNYIQSNNFVAGSTGWRIDKNGNAELHGKFYADSGQFAFNGENNTVVINGNGVTVNLPGGGRVVVGRW
Physico‐chemical
properties
protein length:1056 AA
molecular weight: 115629,27710 Da
isoelectric point:4,83151
aromaticity:0,09375
hydropathy:-0,30758

Domains

Domains [InterPro]
IPR053171
Unmapped
1–816
IPR053171 IPR015406
DC_0023
STR
1–1055
DC_0023
IPR055385
ATT
87–211
IPR055385 IPR032876 IPR055383 IPR057587
IPR003961
STR
613–691
IPR003961 IPR003961
IPR036116
STR
617–792
IPR036116
ARB10879.1
1 1056
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
STR 1-86 | ATT 87-211 | STR 212-331 | ATT 332-494 | STR 495-705 | ATT 706-809 | STR 810-1055 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ARB10879.1
1 1056
Domain Start End Length (AA) Confidence
N-terminal 1 529 529 0,8087
Central domain 530 994 466 0,0829
C-terminal 995 1056 61 0,4506
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-529
Central
530-994
C-terminal
995-1056

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage 29485
[NCBI] 		1970747 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Rissen
[NCBI] 		399587 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARB10879.1 [NCBI]
Genbank nucleotide accession
KY709687.1 [NCBI]
CDS location
range 25070 -> 28240
strand -
CDS
ATGTCTTCAGGCGGCGGCAAAGCATCAACCCCCAAACTCCTCGACGATAATCTCAAATCAAAGCAATTTTACCGGGTACTGGATCTAATTTCGGAAGGTCCAATTTTCGGGCCCGTTGACCAGGAACACCTTTCTTCATTCAAACTGAACAAGACGCCTGTTACCGATGCAAACGGAAATGTCAGTGTGAATGGCGTCAGTGTGGCATGGCGGCCTGGCTCAGATAGTCAGTTACCAATTAACGGTTTCTCAGCAATCGAAGCAACAACCATCGTTAATACGGAAGTCACATACGATACACCTTTGGTACGAACTATAACCGATCAGGACGTTACCCGGGTGCGGTTCAACGTTGGTGTGACCGGTCTGGTTGAGCGGGACACTAAAGGCAATCAGAATAACACTTCCGTCACTATGGTGCTGGAGAGTAGAACTGGTGCTTCAGGCTGGGTTATTGAAAAGACCGTGACTATCACCGGAAAGATATCAGGCGAGTATCTTGAGGCCCATCTGATTGATGCTCCGGATATCAAGCCGTTTGATATTCGCGTTCGCCGCATTACACCCGACAGCAGCAGCGATTTGCTGTCCAACGGCACTATCTGGAATAGCTACAGTGAAATCACCGACGACAACCTTAGCTATCCGTTCTCCGCCATTGCGGGTGCAGTTATTGATCGTGACCAGTACACCGACACCCCTAGTCGCACATACCATCTTCGCGGCCTGATTGTGGACGTTCCTGACAACTACGATCCAATTGCCAGAATTTACTCAGGGCTATGGACTGGCGGATTCAAAAAAGCGTGGACTAACAACCCGGCGTGGCTGTTCCGTGAACTGGCGAGGAATACCCGTTTTGGCCTGGCGAAACGTGCCGGTTATATCGATATAGATGACGGTGCGCTGTACGTCCTCTCACAGTATTGCGATCAGCTTGTTAACGATGGCTACGGCGGGCAGGAACCAAGGATGACGCTGAATGCCTATATTACCGAGCAGGTGAGTGCGCGTGACATTCTCGACAAGATAGCGAGCATGTTTCGCGGTATAGCACTGTGGGACGGGATGCGACTGTCTGTCATGCTGGATGCGCCACAGGACCCGATTGCGACAATCACGAATGCTAACGTGGTTGATGGCGAGTTCAAGCGTAGCTCCGTGAAGCGATCAGAGAAATACAATGCCGTTGTTGTGTCATGGACTGATCCGGATAACGGTTGGGAGCAGGTAAAAGAATACGTTTCCGACGATGAGATGATCGCTCGCGGAAACTACAACGAAACAACAATTGAAGCATTCGGTTGCACGTCTCGCGGTCAGGCATGGCGCGCTGGGAAATGGCTTCTTGAAACGGCGAAACGGGAAAGCAGCAGACTGTCTTTCCAGATGGCGCGCGATGCTATCCACTTCACGCCGGGTGATATCGTTGAAATCATGGATAACAACTATGCTGGTGCGCGTCTTGGTGGCCGCATTATGTCGCATGCAGGTAACAGAATTACCGTGGATGCGGTTGATTCATCCCTGATATCAGACGGCGACACCATGTCAATCATGGGTAGCAACGGGAAGTTCGTTAAATACGAGATTGGCAGCATTTCCGGCAACGTGGTGACGCTGAAAACGACTCCAGCATGGGTTCGTGACGGTACTGTATTTGCCATATCTACCAGTAACGTTTCTACCAGACTATTCCGCATCCTTAGCATTGCAGAGACCGATAACAACTCGGTCTACAGCATCACTGCATCACAACATGACCCGAACAAACAGGCCATTGTTGATGAAGGTGCCGTGTTTGAAGTTCCCAACGATACACTGAACGGGTATCGAGTGCCGAACGTAGAGAACCTGCGCATCATCAACACCAACTCTGAGACTGTTCAGGTTACTGCTACATGGGAGACAGTTACCACCACCAAAAAACTGATGTTCGAACTGTACGTGTACAACGATGAAGGCAAGGTTGTTGCTCAGTATGAAACAGACCAGTTCCGCTACGATTTCTACGGGCTGGAAGCAGGGAGTTACACTCTCGGCGTACGCGGTCGCAACGAAAACGGAATGAAAGGGGCGGAGACGCAGGTAAACATGGTTATTGGTGCGCCGCCAGCGCCATCCGGCGTTGTCTGGACTCCCGGCCTGTTCTCTGCTGACCTTGTGCCTGTCATGCGCATTACGGCAACGACAGACACATCGTTTGAGTTCTGGTACTCCGGGCAGAACCAGATTGTCAATCCTGACGATATTGAAGACCAGGCTCAGTTCCTCGGGCGCTCTAACCAGTGGACGCTTCATGGTCTACAGGCTGATAAGACGTATTACGTTTATGTCCGCACCAAAAATGCTTTCGGGGTATCGGAGTTCGTTGAGGCATCAGGTCAGGCGTCATCAGACATTCCTGGAATGATAGAACTCATTGATGAGCAGATCCGCGAATCAGATGCGTTTAAAAATGTTCAGCAGGGTGTCAACACCAACCTGGACGGTATCATGTCGAACGCGCTGGCGATCCACGGAACCGTTGAGCACCAGTATCAGCAATATGGGGAGGTTCGCGCCGACATCCTTGTTGTGAAAACAACAGTCGCTACTGCCGAGCAGGGGCTCGCCGATCTTTCCACTTACGTACAGGCACAAATAGGCCCTGAAGGAGAGTTAACCTCAGCCGTAAATCAGAAAATGACCGCTGAGGTCAACAGTGATGGCACAGCTAAAGCATCTTACACACTCAATATGGGGATTGTCAGGAACGGTGTGAAATACAATACCGGTTTCGGCATGTCCATTGAGCCTGACGGTAGCTCATACAAATCAACAGTGGTTTTTGCCGCAGATCAGTTCGGCATTTATTCCGGAAGTGATCCTGGAAACTATACCGCTGCGTTTTTCGTCTATAACGGACAGGTATTTATCCGAGATGCGTTAATTCAGGATGGCAGCATTAGCAATGCCAAAATTGGTAATTACATCCAGTCGAATAACTTCGTTGCGGGTTCAACTGGATGGCGCATTGATAAAAATGGAAATGCTGAATTGCATGGCAAATTTTACGCTGACAGTGGCCAGTTTGCCTTTAACGGTGAAAACAACACGGTTGTTATAAATGGCAATGGCGTCACGGTAAATCTACCGGGTGGCGGGCGCGTTGTCGTTGGGCGATGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
0b7e5b716509afdab38af643af32e29f02c694623b2ff6dddbf36bc763fa001c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7959
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of Podoviridae Bacteriophages Infecting Salmonella rissen Contaldi,F., Ianniello,F. and Capparelli,R. 2018-12 — GenBank