Protein

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Genbank accession
UPW42584.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATTPTNLPIPSEDPRDLKFNAGKFDEVMTSDAHYYTDRFGAQRFTIAGFQFTAEDAIRNYGYITMDSFEDGATLTLPNQVLRYEATGEYYRWDGAFPKTVAAGSTPATTGGVGLGAWVSVGDASLRSNLAASNGYTLVGGLAEHYSLPVKFVVVDNAPYNGDLKAALTAATPGSVFWLGKKTYNITGLYGVNRNTVENITIVGAGMPQLSSDKRYLIDGTGTILQGTIKNQARGFKTFNFGIDVGDYVSQNVYPTVTYEDGLQHYGVGANANIEIHNVKFLNTVTDPSKPGTHSFLLEQLSGVKLGYVECIGGFHGFTVKCQGLQGGIAHCYGQYGDAFIFKSDSGGACASNYMERIIVGLYDNSGWPDVTMGGIYDAHDNVTIDKIGIGELIVQNASWGLIPSDANTGFITNVSIGRYSAFNVYGNYYSLTIDNKCVGWTIGEHRISGASGGIRVHPDSAEINIGTGSSKGNTKSGYALGGNSLSHGVLFANENGEAGVEYLGGLGFDASLVRGYVNGTVLVSGMPSVKDGTPVNGWADTGAFDMTLTGKTVRITGSLTRGTAAVAYNTVAACRPLKRVPVPAWGVSASSTMVPVECYVETNGQLNVSGFASIPVGGTIYFSCQYLTK
Physico‐chemical
properties
protein length:630 AA
molecular weight: 66784,93400 Da
isoelectric point:5,50505
aromaticity:0,10794
hydropathy:-0,07048

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
62–133
G3DSA:2.10.10.80
G3DSA:2.10.10.80
ATT
62–130
G3DSA:2.10.10.80 DC_0478
IPR040775
RBD
63–123
IPR040775
UPW42584.1
1 630
Architecture
ATT
STR
ATT 62-133 | STR 134-630
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPW42584.1
1 630
Domain Start End Length (AA) Confidence
N-terminal 1 161 161 0,9926
Central domain 162 517 357 0,9932
C-terminal 518 630 112 0,9885
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-161
Central
162-517
C-terminal
518-630

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CF-SP1
[NCBI] 		2935507 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella paratyphi
[NCBI] 		54388 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPW42584.1 [NCBI]
Genbank nucleotide accession
OM912979.1 [NCBI]
CDS location
range 22121 -> 24013
strand +
CDS
ATGGCTACCACACCGACTAATTTACCAATCCCTTCAGAAGACCCGCGCGACCTGAAATTCAACGCCGGGAAATTTGATGAGGTCATGACATCTGATGCGCATTACTATACCGACCGTTTCGGCGCTCAGCGGTTTACCATCGCAGGATTTCAATTCACCGCAGAAGATGCTATCCGAAATTATGGCTATATCACAATGGATAGCTTTGAGGATGGCGCGACGCTTACTTTACCAAACCAAGTGCTGCGTTATGAGGCAACCGGAGAATATTACCGTTGGGATGGTGCATTTCCTAAAACTGTAGCTGCTGGCTCAACCCCAGCAACAACTGGCGGCGTTGGTTTAGGTGCATGGGTTAGCGTTGGTGATGCTTCTCTGCGGTCAAATTTAGCAGCATCTAATGGATATACTTTAGTTGGTGGCCTTGCTGAGCATTATAGCCTCCCTGTTAAGTTCGTTGTTGTTGATAACGCACCTTATAATGGTGATTTAAAAGCAGCACTAACAGCAGCAACACCTGGTAGTGTTTTCTGGTTGGGTAAGAAAACGTATAACATTACTGGGTTATATGGTGTCAACAGAAATACCGTTGAGAATATTACTATCGTTGGGGCCGGAATGCCGCAATTATCATCTGATAAACGATATCTTATAGATGGCACTGGTACCATTCTTCAAGGAACAATTAAAAATCAGGCCAGAGGGTTTAAGACATTCAACTTCGGTATTGACGTTGGTGATTATGTTTCTCAAAACGTTTATCCGACGGTTACTTATGAAGATGGCCTGCAACATTACGGCGTTGGTGCAAATGCAAATATTGAAATACATAATGTAAAATTTCTTAACACCGTGACAGACCCATCTAAACCTGGCACTCACAGCTTCCTGCTTGAACAGTTGTCAGGTGTTAAATTAGGGTACGTGGAATGTATCGGCGGTTTTCATGGTTTTACAGTTAAATGCCAGGGTTTGCAGGGTGGTATTGCCCATTGTTACGGACAGTATGGTGATGCTTTTATCTTCAAGTCAGATTCTGGTGGCGCATGTGCCAGTAACTACATGGAAAGAATCATAGTGGGCCTTTATGACAACTCTGGCTGGCCTGACGTCACTATGGGCGGAATTTATGACGCTCATGATAACGTAACAATCGACAAAATTGGTATTGGAGAATTAATTGTACAGAACGCATCATGGGGATTGATACCGTCTGATGCCAATACAGGCTTCATAACAAACGTCAGCATTGGTAGATACTCTGCATTTAATGTCTATGGGAACTATTATTCATTAACCATTGATAATAAATGTGTTGGTTGGACTATCGGTGAGCACAGGATTAGTGGAGCTTCTGGTGGTATTCGTGTTCATCCAGATTCTGCTGAGATAAATATAGGAACAGGATCGTCAAAAGGAAACACAAAAAGTGGTTATGCGCTAGGTGGTAACAGCCTCAGTCATGGGGTTCTGTTTGCTAACGAAAACGGTGAGGCGGGTGTGGAATATCTCGGTGGGTTAGGTTTTGATGCATCGCTTGTCCGTGGTTACGTGAACGGAACCGTTCTTGTATCAGGAATGCCGAGTGTGAAAGATGGTACACCCGTTAATGGATGGGCTGATACTGGTGCATTTGATATGACTTTAACTGGTAAAACAGTGCGTATAACAGGTTCGTTAACCAGAGGTACAGCCGCTGTTGCATATAATACTGTCGCCGCATGTAGACCTTTAAAAAGAGTACCAGTACCAGCATGGGGTGTTAGTGCATCAAGTACAATGGTTCCAGTAGAATGTTATGTTGAAACCAACGGGCAGCTAAACGTTTCAGGTTTTGCATCTATACCCGTTGGTGGAACAATATATTTCTCTTGTCAGTATTTAACTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
86eb7ce8b88d01354bd680b8981010736f447aef580305ba128eb63e0edd0fb2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8115
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50