Protein

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Genbank accession
YP_010672628.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,79
Protein sequence
MAKSVIKGDGIYEVSVDKIHSDSTIFFANELYGANVEICIRTDSGLVRMGTLKENSYEAVSHGYLHDLVANVTGWTQEFEILYNRGGGTSYSDVLEEIRDNTSMKTFLDLSDTPSSYSGNKGKILLVGNEGIEFAESSGRTIEQKSVGYFSTTSTQEPSGLGASNSLVLSFGPGGITSDGEFLVGSDGIIERLSGDDQIDMEIVLRFTRDTSAGEARMVARLMHAPDGVNFVQLKDTFGVILDSSEDLGRETFSLKLNLAEGSKTYVEIARDPAGRDTGGIGTFELTGDLATWAPVPSASIDILKTKI
Physico‐chemical
properties
protein length:308 AA
molecular weight: 33132,50330 Da
isoelectric point:4,53509
aromaticity:0,07792
hydropathy:-0,17662

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010672628.1
1 308
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9964
Central domain 140 297 159 0,0045
C-terminal 298 308 10 0,9938
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-297
C-terminal
298-308

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Vp_R1
[NCBI] 		2059867 Uroviricota > Caudoviricetes > Grimontviridae > Dalianvirus R1 >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010672628.1 [NCBI]
Genbank nucleotide accession
NC_070978 [NCBI]
CDS location
range 63669 -> 64595
strand +
CDS
ATGGCTAAATCTGTAATTAAAGGAGATGGTATATATGAAGTCTCCGTTGACAAGATACACTCTGATTCTACAATCTTCTTTGCTAATGAACTGTATGGCGCAAATGTAGAAATATGCATAAGGACAGATAGTGGCCTTGTTAGGATGGGTACCTTAAAAGAAAACTCATATGAGGCTGTATCTCATGGCTATTTGCATGACTTAGTTGCTAATGTGACAGGCTGGACACAAGAGTTTGAGATACTGTACAATCGTGGAGGCGGTACTAGTTACTCTGATGTACTAGAAGAGATAAGGGACAACACTTCTATGAAAACTTTCTTAGACCTATCTGATACACCAAGTTCATATTCTGGGAACAAAGGTAAGATATTACTTGTAGGAAATGAGGGTATTGAGTTTGCTGAATCCTCAGGAAGGACTATAGAGCAGAAATCTGTAGGTTATTTCAGCACAACTTCTACGCAAGAGCCCTCAGGACTAGGTGCATCTAATTCTTTAGTTTTAAGTTTTGGCCCTGGTGGGATAACTTCTGATGGAGAGTTTCTTGTAGGAAGTGATGGAATTATTGAACGTCTATCTGGAGATGATCAGATTGACATGGAGATCGTACTGCGCTTTACAAGAGACACTAGTGCCGGTGAGGCTAGAATGGTGGCAAGACTTATGCACGCACCTGATGGTGTAAATTTTGTGCAGCTTAAAGATACCTTTGGTGTAATACTAGATAGTAGCGAGGACCTGGGAAGGGAGACTTTTAGTTTGAAACTTAACCTAGCTGAAGGGTCTAAGACCTATGTAGAGATTGCAAGGGATCCTGCTGGAAGAGATACAGGTGGTATCGGTACTTTTGAACTAACAGGTGACTTAGCTACATGGGCACCTGTGCCTAGTGCATCAATAGATATTCTAAAAACAAAAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fd5faec462f651cf608698384dc1ed92a7f7587c3709b110124cfedea3f48281
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6970
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of a novel phage Vp_R1 lytic to Vibrio parahaemolyticus Ren,H. and Li,Z. 2023-06 — GenBank