Protein

View in Explore
Genbank accession
UPW39411.1 [GenBank]
Protein name
tail connector protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,84
Protein sequence
MADLKAGSTTGGSVIWHQGNFPLMPAGDDILYKTFKLYSEYNKPQAADNDFVSKANGGTYAATVRFNGGVHVPTVGSSQQCGVYPGNGDSATFDMANIDIVSWNGIGFKSSQGSADRTVVINARNGDISTKGVVTAVGQIRSNAVAPIAANDLTRKDYVDGQINTVNNNANSRVLRSGDTMIGALTAPNFFSQNPASDPSHVPRFDQIVIKDSVQDFGYY
Physico‐chemical
properties
protein length:220 AA
molecular weight: 23351,53150 Da
isoelectric point:5,84182
aromaticity:0,09091
hydropathy:-0,30045

Domains

Domains [InterPro]
DC_0466
STR
1–218
DC_0466
IPR005601
STR
56–194
IPR005601
UPW39411.1
1 220
Architecture
STR
STR 1-218 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPW39411.1
1 220
Domain Start End Length (AA) Confidence
N-terminal 1 99 99 0,5226
Central domain 100 209 111 0,1753
C-terminal 210 220 10 0,8904
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-99
Central
100-209
C-terminal
210-220

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_ESCO47
[NCBI] 		2918870 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPW39411.1 [NCBI]
Genbank nucleotide accession
OM386662 [NCBI]
CDS location
range 102689 -> 103351
strand -
CDS
ATGGCAGATTTAAAAGCAGGTTCAACAACAGGTGGTTCGGTCATTTGGCACCAAGGTAATTTCCCTTTAATGCCAGCTGGCGACGACATCTTATACAAAACGTTTAAATTATATTCTGAATATAACAAACCACAAGCGGCTGATAACGATTTCGTTTCTAAAGCTAATGGTGGTACTTACGCTGCAACTGTTCGATTTAATGGAGGCGTACATGTTCCTACCGTAGGTAGTAGTCAACAGTGTGGTGTTTATCCAGGTAACGGTGATTCAGCTACTTTTGATATGGCAAATATCGACATCGTTTCGTGGAATGGTATTGGTTTTAAATCATCACAAGGTTCAGCAGACCGAACTGTTGTAATTAATGCACGTAATGGTGATATTAGTACAAAAGGCGTTGTGACAGCAGTAGGTCAAATAAGAAGTAATGCAGTTGCTCCTATCGCGGCTAATGACCTTACTCGTAAAGATTATGTTGATGGGCAAATAAATACAGTTAATAATAACGCAAACAGCCGTGTACTTCGTTCAGGCGATACTATGATTGGTGCATTAACAGCTCCAAACTTTTTCTCCCAGAACCCTGCGTCAGATCCTTCACACGTTCCTCGTTTTGACCAAATTGTTATTAAAGATTCTGTACAAGATTTCGGCTATTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9584f3f010ee035fb75f0d37e1e7f5dd2e9f26073883285c96c894177b54bbf2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6818
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Avian Pathogenic Escherichia coli bacteriophages Nicolas,M., Trotereau,A. and Schouler,C. 2015-06 — GenBank