Protein

View in Explore
Genbank accession
YBB94765.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSLQFTQITDKHTLKDLTTQVNNIGLELTKSDNIFEVTDDLTTDINKSQKVKLTNDSGGAKRPNSISFLHDIKEPGYYYIHQSVLQRVPDRPTVAPRDALLVVYPVYTTGTAVIVQQLYTISFSDTELSSVYRYVNNTTASNWQHNVLLPGNKSRTYANMDVLDIDTPGTHFIFRGSNLPVRAGSGLISVVSSEYYGKVFIYVDNETNKIYTSNSNGSGTLNWKSQIEVKDLKPFLLSDVDDNLAVKGTNIGIKVSDNKSFGNFIQDYVTRTNQHVLTFYCQGGVVGNPAGSDSCRGLFISSASEDDFGYGVYYAISNGGRLYTGTVTNSSWNESQKYPIMKELWTGTHNFKDTNKKEQMTDSIDNYNYVEIYTRYRALQNTKGTDKTGTLCHKFYVDDDGIYVCSGSYVSGDPDRIGVEYYRVTLTISGDTWTIKDSAVNNNKNQYIKRVVGLSI
Physico‐chemical
properties
protein length:456 AA
molecular weight: 51024,17610 Da
isoelectric point:6,08754
aromaticity:0,10965
hydropathy:-0,45417

Domains

Domains [InterPro]
DC_1773
STR
10–246
DC_1773 IPR057110
DC_0448
STR
197–456
DC_0448
YBB94765.1
1 456
Architecture
STR
STR 10-456
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YBB94765.1
1 456
Domain Start End Length (AA) Confidence
N-terminal 1 237 237 0,8216
Central domain 238 436 200 0,0286
C-terminal 437 456 19 0,9968
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-237
Central
238-436
C-terminal
437-456

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage IPLA-AICAT
[NCBI] 		3386825 Viruses > unclassified bacterial viruses >
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YBB94765.1 [NCBI]
Genbank nucleotide accession
PQ589826.1 [NCBI]
CDS location
range 93536 -> 94906
strand -
CDS
ATGTCCTTACAATTTACACAAATAACAGATAAACATACATTGAAAGACTTAACAACTCAAGTTAATAATATTGGGCTTGAGTTAACTAAGTCAGACAATATATTTGAAGTAACTGATGACTTAACCACAGACATTAATAAGTCACAGAAAGTTAAATTAACTAATGATTCAGGTGGAGCTAAAAGACCTAATAGTATTAGTTTCCTTCATGATATTAAAGAACCTGGATATTATTATATCCATCAAAGTGTACTACAACGAGTTCCTGACAGACCTACAGTAGCACCTCGTGATGCACTTTTAGTTGTATACCCAGTATATACAACAGGTACAGCTGTAATTGTACAGCAGTTATATACTATTAGTTTCTCTGATACAGAATTAAGTTCGGTGTATAGATATGTTAATAATACAACAGCTTCTAACTGGCAACATAATGTGTTACTCCCAGGAAACAAAAGTAGAACATACGCTAACATGGATGTATTAGATATTGATACACCAGGAACACATTTTATATTCAGAGGCTCTAATTTACCTGTAAGAGCTGGTTCTGGTTTAATATCAGTTGTATCATCAGAATATTATGGAAAAGTATTTATTTATGTTGACAATGAAACTAATAAGATATATACTAGTAATAGTAACGGTTCAGGTACATTAAATTGGAAATCACAAATAGAAGTAAAAGATTTAAAACCTTTTTTACTGTCCGATGTAGATGATAACTTAGCTGTTAAAGGTACTAACATAGGTATTAAAGTATCAGATAATAAATCTTTTGGTAACTTTATACAAGATTACGTAACAAGAACTAATCAGCATGTTTTAACATTTTATTGTCAAGGTGGCGTAGTAGGAAACCCTGCGGGGTCAGATTCTTGTAGAGGGTTATTTATTTCTAGTGCTTCAGAAGATGATTTCGGATATGGTGTATATTATGCTATATCTAATGGTGGAAGGTTATATACAGGTACTGTAACGAATAGTAGTTGGAATGAATCTCAAAAGTATCCTATAATGAAAGAGCTATGGACTGGAACACATAATTTTAAAGACACAAATAAAAAAGAACAAATGACAGATAGTATTGACAACTATAACTATGTAGAGATATATACTCGATACAGAGCATTACAGAACACAAAAGGTACGGATAAAACAGGAACACTTTGCCACAAGTTTTATGTCGATGATGACGGTATTTATGTATGCTCAGGCTCTTATGTATCGGGAGACCCTGATAGAATAGGTGTAGAATACTACAGAGTAACATTAACTATTTCAGGAGATACTTGGACTATTAAAGATAGTGCAGTAAATAATAATAAAAATCAATACATTAAACGAGTAGTTGGTTTATCTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
318ac813c21a2f570eafa68cc6034f228e269e4ca876a6e93eadaa99de7c9917
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7634
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A new bacteriophage infecting Staphylococcus epidermidis with potential for removing biofilms by combination with chimeric lysin CHAPSH3b and vancomycin Duarte,A.C., Fernandez,L., Rodriguez,A. and Garcia,P. 2025 39982075 GenBank