Protein

View in Explore
Genbank accession
CCI89063.1 [GenBank]
Protein name
phage tail fibers
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MFVDDVTRAFESGDFARPNLFQVEISYLGQNFTFQCKATALPAGIVEKIPVGFMNRKINVAGDRTFDDWTVTVMNDEAHDARQKFVDWQSIAAGQGNEITGGKPXEYKKSAIVRQYARDAKTVTKEIEIKGLWPTNVGELQLDWDSNNEIQTFEVTLALDYWE
Physico‐chemical
properties
protein length:163 AA
molecular weight: 18390,38310 Da
isoelectric point:4,71493
aromaticity:0,11728
hydropathy:-0,41543

Domains

Domains [InterPro]
IPR010667
TAS
19–163
IPR010667
CCI89063.1
1 163
Architecture
TAS
TAS 19-163
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phiD1
[NCBI] 		1206560 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tequatrovirus
Host Yersinia pestis
[NCBI] 		632 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CCI89063.1 [NCBI]
Genbank nucleotide accession
HE956711.1 [NCBI]
CDS location
range 98201 -> 98692
strand +
CDS
ATGTTTGTAGATGATGTAACACGAGCGTTTGAATCTGGTGATTTTGCTCGACCTAACTTATTCCAAGTAGAAATTTCTTATCTTGGACAAAATTTTACGTTCCAATGTAAAGCCACTGCTTTACCAGCTGGTATTGTAGAAAAAATTCCAGTCGGATTTATGAACCGTAAAATTAACGTAGCAGGCGATCGTACATTCGATGACTGGACTGTTACAGTAATGAACGATGAAGCTCATGATGCTCGCCAGAAGTTTGTTGATTGGCAAAGCATTGCTGCAGGACAAGGAAACGAAATTACTGGTGGAAAACCTKCMGAGTATAAAAAGAGCGCTATCGTTCGTCAATATGCTCGTGACGCTAAAACAGTAACAAAAGAAATTGAAATTAAAGGTCTGTGGCCTACTAACGTGGGTGAACTTCAATTAGATTGGGATTCAAACAATGAAATCCAAACCTTTGAAGTAACTCTTGCTCTCGATTATTGGGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2793ea78e1d832b0fe1173f2b33fec1467e63726f1d7bdef32d75b31db111ada
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8339
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of five bacteriophages specific for Yersinia species Skurnik,M., Nawaz,A., Happonen,L., Butcher,S. and Mattinen,L. 2012 — GenBank