Protein

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Genbank accession
QVJ12688.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTLRVDTLQKPDNSVTVNLEDIITEVNLGDTTSPTKGAGLVGFSSSVSYPDGTVGAEILEVSSKIGVTVKDYGAVGDGVTDDTVAIQAAITAVGQYKDLGWPRGTYLITQKLVMPTGQRWVGAGGQRGATIKKGANIDMVEVGTLCTVLDISLEGEGATYSGKGFVIESGFSQNLVRCRAVNMGGEPLYFANNAGGGANVTAFEGYPVDTDTYAGCVIAGDTSPHPRFFRGMWLSGANFALGPGAGNGGSMTQFYIRDLRFDPTSTLFRISNGRCATLGATTTLKGFDHSIDGVAFAGPVALDSAQGINLGPSCSVPSLTENATNSQYNSVYVQRRTYTPTWTQTSATPAIGNGTLTGNYVRAGHMCHVQIELVAGSTTTFGDAASGYRFSLPFPGHLSFNQRGFPVRIYDTSASADFTG
Physico‐chemical
properties
protein length:421 AA
molecular weight: 44048,65300 Da
isoelectric point:5,27889
aromaticity:0,09026
hydropathy:-0,07173

Domains

Domains [InterPro]
DC_0088
STR
3–421
DC_0088
IPR024535
ENZ
69–143
IPR024535
QVJ12688.1
1 421
Architecture
STR
STR 3-421
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVJ12688.1
1 421
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,9743
Central domain 85 323 240 0,9875
C-terminal 324 421 97 0,9815
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-323
C-terminal
324-421

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PSA11
[NCBI] 		2833430 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVJ12688.1 [NCBI]
Genbank nucleotide accession
MZ089731.1 [NCBI]
CDS location
range 1 -> 1262
strand -
CDS
ATGAGTACGTTGAGAGTAGACACTCTACAAAAACCTGATAACAGCGTCACTGTTAATCTGGAAGATATCATTACGGAAGTGAATCTAGGTGATACCACTTCCCCCACTAAAGGAGCTGGCCTAGTAGGTTTCTCTAGTAGCGTTAGTTATCCTGACGGTACTGTAGGGGCTGAAATCCTAGAGGTAAGCTCTAAGATTGGCGTTACAGTAAAAGACTATGGTGCTGTCGGTGATGGCGTCACTGATGATACCGTAGCGATTCAAGCAGCCATCACTGCGGTTGGTCAATATAAAGACTTAGGATGGCCTCGTGGTACCTACCTAATTACTCAGAAGTTGGTAATGCCAACTGGTCAAAGATGGGTGGGCGCTGGTGGCCAACGTGGTGCCACTATCAAGAAGGGCGCCAACATCGACATGGTAGAAGTAGGTACTCTGTGTACTGTTCTTGATATTAGCCTAGAAGGTGAGGGAGCTACTTACTCCGGTAAAGGGTTTGTAATTGAGTCTGGCTTCAGTCAGAACCTAGTGCGTTGCAGAGCCGTTAACATGGGTGGTGAACCACTATACTTCGCTAATAACGCAGGTGGCGGTGCAAACGTAACAGCGTTTGAAGGTTACCCTGTAGATACGGATACTTACGCTGGGTGCGTTATTGCAGGAGATACTTCTCCTCATCCTCGGTTCTTCCGTGGTATGTGGTTGAGCGGTGCTAACTTTGCCCTTGGCCCTGGTGCAGGTAATGGCGGATCGATGACTCAATTCTACATTAGGGATTTGAGGTTTGATCCTACTTCAACTCTGTTCCGCATTTCCAATGGACGTTGTGCAACTCTTGGAGCCACGACGACTCTTAAGGGTTTCGATCACTCAATTGATGGCGTTGCTTTTGCAGGTCCAGTTGCACTCGACTCTGCTCAAGGCATCAACCTTGGTCCGTCTTGCTCTGTACCGTCACTCACGGAGAATGCGACCAACTCGCAATACAACTCCGTCTATGTACAGCGTAGGACCTACACCCCAACTTGGACGCAGACTAGTGCTACTCCTGCAATTGGTAATGGTACCTTGACTGGGAACTATGTCCGAGCTGGTCACATGTGTCATGTGCAGATTGAATTGGTAGCAGGTTCGACTACGACCTTCGGTGATGCTGCATCAGGCTATCGTTTCTCTCTCCCGTTCCCTGGACACCTGTCTTTCAACCAGAGAGGGTTCCCTGTGAGAATCTACGACACTAGTGCTAGTGCAGATTTCACTGG

Genome Context

Genome Context

Tertiary structure

PDB ID
a380f786d9081d1b9c4d46dfd8f2b2678d68e7f3a50ff176699c414c6a33d459
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8073
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lytic bacteriophages targeting P. aeruginosa isolated from hospital wastewater Nordstrom,H.R., Evans,D.R., Finney,A.G., Westbrook,K.J., Yassin,M.H., Doi,Y. and Van Tyne,D. 2021-07-09 — GenBank