Protein

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Genbank accession
NP_680496.1 [GenBank]
Protein name
tail fiber protein and host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
Protein sequence
MKDFYFVDRSWHLLGIATAGGGGKIHIVDDTDDQLISAGARTYSGTILFTPELSSKVQTMAARGNYILYMDERNKAVFMTIMESSHDPLAGEETFTAEDAGIDLINETVGPYKAPQAMSIADYISLFTNDSGFEIGLNEIPDLKRTLEWTGESDTTLNRILSVATQFDNAELDFSFDVSGTTVVRRLINIHKRIGADRNITLYVDKDINKIVTSDSIYDLYTAVTPTGGTPESKDGETVDQQPITLEGYQWTDPDGRYVLTKEGVLLDPVANQTWSRLLAKGGAPSVNAAYINRVVTYTATSQATLLQSALSDLKTHNHEAVNYETDIAVLPQNINIGDTIHLADEDEHLYLSARLLELKSSYSMDTHTATLGDYLIEHDQVAAQYRQLAEQIKNIPKTIQYYPWLRYADDDKGTNMSALPAGKKYMAVVYSNKSSVPSDNPADYAGKWALIQGPKGDNGVGVPGPKGADGKTSYFHTAYANSIDGKQGFSTTNGNGKSYFGQYVDQTKADSTDPTKYSWALFKGTDGRDGKDGSDNVPVITVGAAYPSGPKKGDMHWLTDSSGVVTGYYTYDGTKWNPYKIDAKILSAETFNGMTFNGVTFTGSKFISSFKGVKPDGVADYTVHGTTTMADGKIVTDTYSDTDNSQVTHTELSQFGLLSQIYNKGTLMDSAQLSLGMLTLSGNYQTASNKPLEWITSSLDALRVLQLTNNNLLVWHGAFYPQSGDTATISTPLSKTLSGWLIAWSYYQNGSPTYNNYAFTLLPKAALIYNTTGANYLRVTFTMKDVGTIFKVLWYDDTHIVGTAENNTGSLSKAVMTEVYAV
Physico‐chemical
properties
protein length:823 AA
molecular weight: 90068,22800 Da
isoelectric point:4,94234
aromaticity:0,10328
hydropathy:-0,34131

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage A2
[NCBI] 		51369 Uroviricota > Caudoviricetes > Ashduovirus >
Host Lacticaseibacillus casei
[NCBI] 		1582 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_680496.1 [NCBI]
Genbank nucleotide accession
NC_004112.1 [NCBI]
CDS location
range 15507 -> 17978
strand +
CDS
ATGAAAGATTTTTATTTTGTGGATAGATCATGGCATCTGCTCGGTATTGCAACTGCTGGAGGTGGTGGGAAAATCCACATTGTCGATGATACTGATGATCAGCTTATCTCAGCAGGTGCTCGCACCTATTCAGGAACCATTCTGTTCACCCCCGAACTGTCTTCTAAGGTTCAAACGATGGCAGCACGTGGCAATTACATTTTGTATATGGATGAGCGAAATAAGGCAGTCTTTATGACAATTATGGAATCAAGTCATGATCCACTTGCTGGTGAGGAGACATTCACTGCTGAAGATGCTGGTATTGATTTGATTAACGAAACCGTTGGCCCCTATAAAGCTCCACAAGCAATGAGCATCGCCGATTATATTAGCCTATTCACGAATGACTCAGGTTTTGAAATCGGTCTTAACGAGATCCCTGATTTGAAGCGAACGCTTGAATGGACTGGCGAGTCTGACACCACTTTAAATCGTATTCTATCTGTTGCGACTCAGTTTGATAATGCTGAACTGGACTTTAGCTTCGATGTGTCAGGGACAACGGTTGTGCGCCGCTTAATCAACATTCATAAGCGCATCGGTGCTGATAGGAATATCACGCTGTATGTGGATAAAGACATCAATAAGATTGTGACGTCCGACAGTATTTATGATCTTTATACTGCCGTTACACCGACAGGTGGCACACCTGAAAGCAAAGATGGCGAGACCGTTGATCAGCAGCCAATCACACTTGAAGGTTATCAGTGGACAGATCCCGATGGTCGTTACGTGTTAACGAAAGAGGGTGTTTTGCTTGACCCAGTTGCCAACCAAACATGGAGCAGACTTTTGGCTAAGGGTGGTGCACCGAGTGTCAATGCAGCGTATATCAATCGTGTTGTCACTTATACGGCTACTTCGCAAGCAACCTTGCTTCAATCTGCGCTCTCTGACCTAAAGACGCACAACCATGAAGCTGTCAATTATGAGACTGACATTGCTGTGCTGCCACAAAATATCAACATTGGTGACACAATTCATTTAGCTGACGAGGATGAACACTTGTATCTGTCGGCTCGCTTGCTCGAGCTCAAATCAAGCTATTCGATGGATACACACACAGCAACTTTGGGAGACTACCTTATTGAACATGATCAGGTAGCAGCCCAATATCGGCAACTTGCTGAACAAATTAAGAACATCCCCAAAACAATCCAATACTACCCATGGCTTCGCTATGCCGATGATGACAAGGGCACCAACATGAGTGCTTTGCCAGCTGGCAAGAAGTATATGGCGGTTGTATACAGCAACAAGTCATCCGTGCCAAGTGACAATCCGGCTGATTACGCCGGCAAGTGGGCATTGATTCAGGGACCAAAAGGTGACAACGGTGTGGGTGTGCCGGGCCCTAAGGGAGCTGATGGCAAAACTAGCTACTTTCATACAGCCTATGCTAACAGCATTGATGGGAAACAAGGATTTTCAACCACAAATGGCAATGGTAAGTCTTATTTCGGCCAATATGTTGACCAGACCAAAGCGGATAGTACCGATCCCACAAAATACTCATGGGCATTGTTCAAAGGTACTGATGGTCGTGACGGCAAAGATGGTAGCGATAATGTGCCAGTCATTACTGTTGGTGCAGCGTATCCATCAGGCCCCAAAAAGGGGGATATGCATTGGCTGACTGATAGCAGCGGTGTTGTAACGGGATATTATACCTATGATGGGACTAAATGGAACCCTTATAAAATCGACGCTAAGATTCTTTCGGCAGAAACATTTAACGGCATGACCTTCAACGGGGTTACATTTACCGGGTCTAAGTTCATTTCTTCATTTAAAGGTGTCAAACCCGATGGCGTTGCTGACTATACCGTCCACGGGACAACCACAATGGCCGATGGCAAGATCGTCACAGATACGTATTCGGATACTGACAACAGTCAGGTGACGCATACCGAACTCAGCCAATTTGGCTTGCTAAGTCAAATTTATAACAAAGGCACGCTGATGGATAGTGCGCAACTATCGTTAGGTATGTTAACGCTAAGCGGCAACTATCAAACTGCCAGTAACAAGCCGTTGGAGTGGATCACCAGCAGCTTAGATGCTTTAAGAGTCTTGCAATTAACAAATAATAACTTGCTTGTTTGGCATGGCGCTTTCTATCCGCAATCTGGAGATACTGCAACAATATCGACGCCACTTTCAAAGACTTTATCTGGATGGTTAATTGCATGGAGCTATTATCAAAACGGATCACCAACGTATAACAACTATGCGTTCACGCTGTTACCAAAGGCCGCTTTGATTTATAACACGACTGGTGCTAACTATTTAAGAGTGACCTTCACAATGAAGGATGTTGGAACCATCTTCAAAGTTCTGTGGTATGACGACACACATATTGTTGGCACGGCTGAGAACAATACGGGCTCGTTATCAAAGGCGGTTATGACTGAGGTATACGCAGTTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
3b54fe738c93e76d585b43d058a7cfbf964064036feecb4855f6dabb1c06692e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7926
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria Proux,C., van Sinderen,D., Suarez,J., Garcia,P., Ladero,V., Fitzgerald,G.F., Desiere,F. and Brussow,H. 2002 12374837 GenBank
Characterization of the DNA replication module of bacteriophage A2 and use of its origin of replication as a defense against infection during milk fermentation by Lactobacillus casei Moscoso,M. and Suarez,J.E. 2000 10891412 GenBank
A2 cro, the lysogenic cycle repressor, specifically binds to the genetic switch region of Lactobacillus casei bacteriophage A2 Ladero,V., Garcia,P., Alonso,J.C. and Suarez,J.E. 1999 10489355 GenBank
Cooperative interaction of CI protein regulates lysogeny of Lactobacillus casei by bacteriophage A2 Garcia,P., Ladero,V., Alonso,J.C. and Suarez,J.E. 1999 10196287 GenBank
The site-specific recombination system of the Lactobacillus species bacteriophage A2 integrates in gram-positive and gram-negative bacteria Alvarez,M.A., Herrero,M. and Suarez,J.E. 1998 9770432 GenBank
Identification of the repressor-encoding gene of the Lactobacillus bacteriophage A2 Ladero,V., Garcia,P., Bascaran,V., Herrero,M., Alvarez,M.A. and Suarez,J.E. 1998 9642205 GenBank
Molecular analysis of the cos region of the Lactobacillus casei bacteriophage A2. Gene product 3, gp3, specifically binds to its downstream cos region Garcia,P., Alonso,J.C. and Suarez,J.E. 1997 9044284 GenBank
Complete nucleotide sequence and analysis of the morphogenetic module of the Lactobacillus casei bacteriophage A2 Garcia,P., Ladero,V. and Suarez,J.E. 2022-01-20 — GenBank