Protein

View in Explore
Genbank accession
XLQ29671.1 [GenBank]
Protein name
long-tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MEKFMAEFGQGYVQTPFLSESNSVRYKISIAGSCPLSTAGPYVKFQDNPVGNQTFSAGLHLRVFNPSTGALVDSKSYAFSASNNTTSAAFVSFMNSLTNNRLVAILTNGKVNFPPEVVSWLRGAGTSVFPSDSVLSRFDVSYAAFYTSSKRAIALEHVKLSNRKSTDDYQTILDVVFDSLEDVGATGFPKRTYESVEQFMSAVGGTNNEIARLPTSAAISKLSDYNLIPGDVLYLKAQLYADADLLDLGTTNISIRFYNASNGYISSTQAEFTGQAGSWELKEDYVVVPENAVGFTIYAQRTAQAGQGGMRNLSFSEVSRNGGISKPAEFGVNGIRVNYICESASPPDIMVLPTQASSKTGKVFGQEFREV
Physico‐chemical
properties
protein length:371 AA
molecular weight: 40140,40970 Da
isoelectric point:5,41183
aromaticity:0,11051
hydropathy:-0,13881

Domains

Domains [InterPro]
DC_0912
STR
1–371
DC_0912
PS52031
LEC
22–192
PS52031
IPR039477
STR
58–112
IPR039477
XLQ29671.1
1 371
Architecture
STR
STR 1-371
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLQ29671.1
1 371
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,5634
Central domain 155 360 207 0,3953
C-terminal 361 371 10 0,1339
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-360
C-terminal
361-371

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Ec_YwIITB1
[NCBI] 		3366621 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLQ29671.1 [NCBI]
Genbank nucleotide accession
PQ356294.1 [NCBI]
CDS location
range 156064 -> 157179
strand +
CDS
ATGGAAAAATTTATGGCAGAGTTTGGACAAGGATATGTCCAAACGCCATTTTTATCGGAAAGCAATTCAGTAAGATATAAAATAAGCATAGCGGGCTCTTGCCCGCTTTCTACTGCAGGGCCATATGTTAAATTTCAGGATAATCCCGTTGGAAATCAAACATTTAGTGCAGGTCTTCATTTAAGAGTTTTTAACCCTTCTACCGGAGCATTAGTTGATAGTAAGTCATATGCTTTTTCTGCTTCAAACAATACAACATCTGCCGCTTTTGTCAGTTTTATGAATTCTTTGACGAATAACAGACTTGTTGCTATATTAACTAACGGAAAGGTTAATTTTCCTCCTGAAGTGGTATCTTGGTTAAGGGGCGCAGGAACTTCAGTTTTTCCATCAGATTCAGTATTGTCAAGATTCGACGTATCATATGCTGCTTTTTACACTTCTTCTAAAAGAGCTATTGCATTAGAGCATGTTAAACTGAGCAACAGAAAAAGCACAGATGACTATCAAACTATTTTAGATGTGGTGTTTGATAGTTTAGAAGACGTCGGAGCTACGGGATTTCCTAAAAGAACATACGAAAGTGTCGAGCAATTTATGTCAGCGGTTGGTGGAACTAACAACGAAATTGCGCGACTGCCAACTTCAGCTGCTATAAGTAAATTATCTGACTATAATTTAATCCCTGGTGATGTTCTTTATCTTAAAGCACAGTTATATGCTGATGCTGATTTACTTGATCTTGGAACTACAAATATATCTATCCGTTTTTATAATGCATCAAATGGATATATTTCTTCGACACAGGCTGAGTTTACCGGGCAAGCTGGGTCTTGGGAATTAAAGGAAGATTATGTAGTTGTTCCTGAAAACGCTGTCGGATTTACTATATATGCGCAGAGAACTGCTCAAGCTGGTCAAGGCGGAATGAGGAATTTAAGCTTTTCTGAAGTGTCAAGAAATGGAGGTATTTCGAAACCCGCCGAATTTGGCGTCAACGGCATTCGCGTTAATTATATCTGTGAATCGGCTTCACCTCCAGATATAATGGTACTTCCTACGCAAGCCTCTTCTAAAACTGGCAAAGTGTTTGGGCAAGAATTTAGAGAAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
10e86b65ea3bb030a43306c2ae1c268670022d94aa435a24364c41880656a73d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6838
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Escherichia coli genome Wangchuk,J., Chatterjee,A., Khan,R. and Kondabagil,K. 2021-07-12 — GenBank