Protein

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Genbank accession
XMR02076.1 [GenBank]
Protein name
E3 ubiquitin-protein ligase HERC1
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFVRLFDYGNITPGPKNIIKVGASTQGQFVLTDSHELYYIGRNQGGESGNGNKNTVSSWILVSADVSNFFTGGRTLVIIKNDNTIWTSGETYWFTSSTTTSYSTTLVDRTEWFTNTIPVNQIANIVCNGGVIFVLSSSSVLYGAGANGYRGVLGIGSSSIYTLTLCASNVRKVMSTSNDSMYITLDNKLYSSGWNDRGLHGTGDRTQVNIWGLRSSGVIDAAIGGHTLNYYNATSYFTCGTTPNFLSSDSTTFKAVPVSTLPNNSPLFMTNSEATSTATQIILTSAYQKGIGANRGLGLNNSQTGAIYSATNLQLPVEVSEISDVAFSDGLTSLLTKDGDVYSTGIFYAIPGASADVAVFTKIDLPK
Physico‐chemical
properties
protein length:369 AA
molecular weight: 39365,42640 Da
isoelectric point:5,60401
aromaticity:0,10298
hydropathy:-0,02385

Domains

Domains [InterPro]
DC_0433
ATT
1–125
DC_0433 DC_0436
IPR009091
STR
5–237
IPR009091 DC_0436
IPR051210
Unmapped
18–347
IPR051210
IPR009091
STR
32–347
IPR009091
DC_0436
RBD
97–202
DC_0436
XMR02076.1
1 369
Architecture
ATT
STR
RBD
ATT 1-125 | STR 126-347 | RBD 348-369
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR02076.1
1 369
Domain Start End Length (AA) Confidence
N-terminal 1 57 57 0,2660
Central domain 58 335 279 0,6512
C-terminal 336 369 33 0,4544
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-57
Central
58-335
C-terminal
336-369

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey5
[NCBI] 		3375711 No lineage information
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR02076.1 [NCBI]
Genbank nucleotide accession
PQ471516 [NCBI]
CDS location
range 343410 -> 344519
strand -
CDS
ATGTTACCTTTTGTAAGACTGTTTGATTATGGGAATATTACCCCTGGTCCTAAAAATATAATTAAAGTTGGTGCTTCTACACAAGGTCAATTCGTATTGACTGATTCACATGAATTATATTACATAGGCAGAAATCAAGGTGGTGAATCTGGAAATGGTAATAAAAACACGGTATCTTCATGGATATTAGTAAGTGCAGATGTTTCTAATTTTTTCACTGGAGGACGAACACTTGTTATTATTAAAAATGACAATACGATATGGACATCCGGTGAAACATATTGGTTCACATCATCAACAACAACTTCTTACAGTACTACATTAGTTGATAGAACGGAGTGGTTTACAAATACAATTCCTGTGAATCAAATTGCTAATATTGTATGCAATGGTGGTGTAATATTTGTACTCAGTTCAAGTTCAGTACTCTATGGTGCTGGGGCTAATGGATACCGTGGTGTATTGGGGATTGGTTCTTCATCAATATATACATTAACACTATGTGCTTCTAATGTGCGTAAAGTGATGTCAACTTCCAATGATAGTATGTATATTACCTTAGATAATAAGTTATATAGTTCAGGGTGGAATGACCGTGGGTTACATGGCACAGGGGACAGAACACAAGTTAACATTTGGGGACTGCGTAGTTCTGGTGTAATAGATGCAGCTATTGGTGGTCATACACTCAATTACTATAATGCTACATCATATTTCACATGTGGTACAACTCCAAACTTTCTTAGTTCAGATTCAACTACATTCAAAGCAGTTCCTGTAAGTACTTTACCTAATAATTCACCTTTGTTTATGACAAATTCAGAGGCAACAAGCACGGCTACGCAAATTATACTAACCAGTGCATATCAGAAAGGTATTGGGGCAAACCGTGGTTTGGGATTAAACAATTCTCAAACGGGTGCTATCTATAGTGCTACCAATTTACAATTACCTGTAGAAGTTAGTGAGATTAGTGATGTTGCTTTTAGTGACGGATTAACATCATTATTAACCAAAGACGGGGATGTATATAGTACTGGTATATTTTATGCAATACCAGGTGCAAGTGCAGATGTTGCAGTCTTTACTAAAATTGATTTACCAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
73d441c34742499ae703e3ab1ce5bbb97ef074cbfd646e54d0da27bb8a749742
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8609
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank