Protein

View in Explore
Genbank accession
AGN12304.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,51
Protein sequence
MAINFPSNPSVNDTHTANNITWKWDGTTWKVGITTFNAATIPGISTSGTSYFYDLDVAHNVSVGSSITAGTYFGDGAGLTNVAGTTGPAGPTGSPGPAGPAGGTGPQGSPGPAGSPGATGPVGNPGPTGPSGGPVGPPGPPGPAGGGTGGTIGSGSFNAVAGQTVQLDSVTQAHLLSDYDMYFSHSAGTQSQKVTVLNAGGTTAHSQQFGIMFNNNLLVSVGSSIHNSNLTVNVTPEPGITGTVTYKFLRTEVS
Physico‐chemical
properties
protein length:254 AA
molecular weight: 24945,93690 Da
isoelectric point:5,47936
aromaticity:0,07087
hydropathy:-0,16732

Domains

Domains [InterPro]
DC_1556
RBD
1–254
DC_1556
PTHR24637
Unmapped
83–148
PTHR24637
AGN12304.1
1 254
Architecture
RBD
RBD 1-254
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM5
[NCBI] 		536454 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12304.1 [NCBI]
Genbank nucleotide accession
HQ632825.1 [NCBI]
CDS location
range 118003 -> 118767
strand -
CDS
ATGGCTATTAATTTTCCAAGCAATCCTAGCGTAAACGATACTCACACTGCAAATAATATTACATGGAAGTGGGATGGAACAACTTGGAAAGTTGGCATAACCACTTTTAATGCTGCTACTATTCCAGGTATTAGCACATCAGGGACATCATATTTTTATGATTTAGATGTTGCTCATAATGTATCAGTGGGTTCTTCTATAACTGCTGGTACTTATTTTGGTGATGGTGCTGGTTTAACAAATGTTGCTGGTACTACTGGTCCTGCTGGTCCTACTGGTTCTCCTGGTCCTGCTGGTCCTGCTGGTGGAACTGGTCCACAAGGTTCACCTGGTCCTGCTGGTTCGCCTGGTGCAACTGGTCCTGTTGGAAATCCTGGTCCTACTGGTCCTTCTGGTGGTCCTGTTGGTCCTCCAGGTCCTCCTGGTCCTGCTGGTGGTGGAACGGGTGGAACTATTGGTAGTGGATCCTTTAATGCAGTTGCAGGTCAAACAGTTCAGTTGGATAGTGTTACACAGGCTCATTTACTATCTGATTATGATATGTATTTTAGTCATAGTGCTGGTACACAATCTCAAAAAGTTACAGTATTAAATGCTGGTGGAACTACTGCACACTCTCAACAATTTGGTATTATGTTTAATAATAATTTACTTGTTTCTGTTGGATCATCTATTCATAATAGTAATTTAACTGTAAATGTTACACCAGAGCCAGGAATAACTGGCACAGTAACGTATAAGTTCCTTAGAACGGAGGTATCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
29d1e75d1fb1742b3e3beef5ad6c4f67fe6dcbb2bb754f1f2dcac8fadbcbb6af
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7822
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM5 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank