Protein

View in Explore
Genbank accession
XKI62318.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,80
Protein sequence
MSTITQFPSGNTQYRIEFDYLARTFVVVTLVNSSNPALNRVLEVGRDYRFLNPTMIEMLVDQSGFDIVRIHRQTGTDLVVDFSNGSVLTASDLTNSELQSIHIAEEGRDQTVDLAKEYADAAGISAGNAKDSEDEARRIASSIKSSGLIGYIPRRSFEKGFNVTAWNEALLWEEDGDYYRWEGTLPKNVPAGSTPESSGGIGLGAWVSVGDILEQKVYIVVITGQSNAQGANSGGPNPASPHVKVWDGTTNTWGSSDYTQLPFSQSTPNGNGGNNNIALSFAHRLIDEHRNSKVYVIYDAVGGRPISDWVGSGTASIRYAAIKAKVEAALATPELVAAGKTKIDYLIWAQGEEDALTDTITVYRDKFKTLDTQFRSEAWMENHTPMFVMGMSGLHTRYQVWQGQLSYCENQNRNCIYVNSMGLKTQYDVSGTGDYTHWLGDSLWEHGYHRIWYALQERGITHRNQLAPFYGRGTGPWDGQPDAIAMFSSLVSIDSATSQFPTNSVAATGSITWGLNCAADGNYTFAGGHTVTTDNTCNYSAAWGRSISLGPGAQYSASFGRENNVTGNHQFAVGRGHTTSSDGETCL
Physico‐chemical
properties
protein length:587 AA
molecular weight: 64060,92110 Da
isoelectric point:5,17050
aromaticity:0,10221
hydropathy:-0,38245

Domains

Domains [InterPro]
DC_0369
STR
1–585
DC_0369
IPR005604
ATT
10–113
IPR005604 G3DSA:2.10.10.80 SSF52266 IPR011049
IPR040775
RBD
154–211
IPR040775 IPR052940
IPR036514
STR
218–466
IPR036514
IPR005181
ENZ
219–428
IPR005181
XKI62318.1
1 587
Architecture
ATT
STR
ATT
STR
ATT 1-113 | STR 114-150 | ATT 151-217 | STR 218-586 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XKI62318.1
1 587
Domain Start End Length (AA) Confidence
N-terminal 1 383 383 0,5487
Central domain 384 576 194 0,6937
C-terminal 577 587 10 0,7531
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-383
Central
384-576
C-terminal
577-587

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CHRF_10037
[NCBI] 		3377762 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Typhi
[NCBI] 		90370 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XKI62318.1 [NCBI]
Genbank nucleotide accession
PQ336907.1 [NCBI]
CDS location
range 38169 -> 39928
strand +
CDS
ATGTCCACGATTACACAATTCCCTTCAGGAAACACTCAGTACAGGATTGAGTTCGACTACCTAGCCAGAACGTTTGTTGTTGTTACGCTGGTGAATAGCTCTAACCCTGCCCTGAACCGTGTACTGGAAGTTGGTCGAGATTACCGATTCCTTAATCCAACGATGATTGAGATGTTGGTTGACCAATCAGGTTTCGACATCGTTCGTATTCACCGTCAGACTGGAACTGACTTAGTGGTAGACTTCAGTAATGGCTCAGTGTTGACAGCTAGTGACCTGACCAATTCAGAGCTTCAGTCTATCCATATTGCAGAAGAAGGTCGAGACCAAACTGTTGACTTAGCGAAGGAATATGCCGATGCTGCTGGTATCTCTGCTGGCAACGCTAAGGATAGCGAGGACGAAGCACGACGAATCGCTTCGAGTATCAAGTCGTCTGGACTAATTGGCTATATCCCCCGTCGCTCCTTCGAGAAAGGCTTCAACGTTACAGCATGGAACGAGGCCCTGCTATGGGAAGAGGATGGTGATTATTACCGCTGGGAGGGTACGCTTCCAAAGAACGTTCCTGCTGGTTCAACTCCTGAATCATCTGGCGGTATTGGTCTGGGTGCTTGGGTTAGTGTTGGTGATATCCTTGAGCAGAAGGTTTACATAGTAGTAATCACCGGGCAGTCGAATGCTCAGGGTGCTAACTCCGGTGGGCCTAATCCAGCGTCGCCTCATGTTAAAGTATGGGATGGTACTACTAATACTTGGGGTAGTAGTGATTATACGCAATTACCTTTCTCCCAAAGTACCCCTAATGGTAATGGTGGGAATAACAACATTGCTTTGTCTTTTGCTCATCGTTTAATTGATGAACATAGGAATTCCAAAGTTTACGTTATCTACGATGCTGTTGGTGGGCGGCCTATTAGTGATTGGGTCGGTTCTGGCACTGCATCTATTCGTTACGCTGCAATCAAAGCTAAAGTAGAGGCTGCATTGGCTACACCTGAACTAGTGGCTGCTGGTAAAACTAAGATTGATTACCTGATTTGGGCGCAAGGGGAAGAAGATGCACTGACTGATACCATTACGGTTTACCGTGATAAGTTTAAAACCTTGGATACACAATTCCGTTCCGAAGCGTGGATGGAGAATCATACCCCAATGTTTGTGATGGGTATGTCTGGTCTTCATACTCGTTATCAGGTATGGCAAGGACAATTGAGTTACTGTGAGAACCAGAACCGTAACTGTATTTACGTTAACTCTATGGGACTAAAGACTCAGTATGACGTATCAGGTACAGGTGATTATACACACTGGTTGGGCGATTCACTGTGGGAGCATGGTTATCATCGTATCTGGTATGCACTCCAAGAACGAGGCATTACTCACCGTAACCAACTGGCTCCGTTCTATGGACGTGGTACTGGTCCGTGGGATGGGCAGCCTGATGCAATTGCTATGTTTAGTTCTCTGGTAAGTATTGACTCAGCAACATCTCAGTTTCCAACCAATAGTGTAGCTGCTACTGGTTCCATTACTTGGGGACTGAACTGTGCAGCAGATGGTAACTACACCTTCGCAGGTGGTCATACTGTAACAACGGATAATACATGTAACTACTCTGCTGCATGGGGTAGGAGCATCTCACTGGGACCCGGTGCTCAGTATAGTGCAAGTTTCGGTAGGGAGAACAACGTAACTGGTAATCACCAGTTTGCAGTTGGTCGAGGCCACACTACCAGCAGTGACGGTGAAACCTGTCT

Genome Context

Genome Context

Tertiary structure

PDB ID
77ff62e0d661750410d6450ffb3418f58076093dfe0bc99df3f82b6199981435
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8019
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequences of bacteriophages that infect Salmonella Typhi from Bangladesh Islam,S., Kabiraj,R., Sarkar,H., Dev,P.C., Tanni,A.A., Keya,D.P., Malakar,A.R., Tanmoy,A.M., Saha,S.K., Hooda,Y. and Saha,S. — — GenBank