Protein

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Genbank accession
YP_009851242.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MANVRPLVRKNGVMTQMRAGVDTIDPALFAVPGRNMLINGGITWWQRGSAGTVTDWEVYSADRWSVGCRGEGITCNWGIGTFDASELLPINNPPRNFLGFNLLPGLTAAWARQKIEGATTFHNGKATVSFWMRCAKIGNMVGIRLVQDFPGGGDPSVTVYGDSFQLTPTFQKFTYTFDVPSLNGKNLGNIGGTLQIIFDFNAPAPYYNGDVANQQGLFEFTNVQFEAGSVATDFERRPAALELHLCQRYYEKSYSPEVNPGTTTVPGSAGSGARTGYYLHAPCTQFTVAKRAPPSIMVYSPQSGQNGNVAEYNTTASFVANRVGIVLNIGQTNFELILGNGDATPNNTIRWHWTADSEL
Physico‐chemical
properties
protein length:359 AA
molecular weight: 39078,45460 Da
isoelectric point:6,43408
aromaticity:0,11421
hydropathy:-0,21253

Domains

Domains [InterPro]
DC_0568
STR
5–359
DC_0568
IPR008979
STR
37–200
IPR008979
G3DSA:2.60.120.260
STR
90–225
G3DSA:2.60.120.260
YP_009851242.1
1 359
Architecture
STR
STR 5-359
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009851242.1
1 359
Domain Start End Length (AA) Confidence
N-terminal 1 238 238 0,1497
Central domain 239 348 111 0,0003
C-terminal 349 359 10 0,9992
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-238
Central
239-348
C-terminal
349-359

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage Mendera
[NCBI] 		2650877 Uroviricota > Caudoviricetes > Menderavirus >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009851242.1 [NCBI]
Genbank nucleotide accession
NC_048804.1 [NCBI]
CDS location
range 104899 -> 105978
strand +
CDS
ATGGCTAACGTGCGTCCTCTAGTCCGCAAGAACGGCGTGATGACGCAGATGAGAGCGGGAGTTGATACAATCGACCCCGCTCTTTTCGCTGTTCCTGGACGGAACATGCTCATCAATGGTGGCATTACCTGGTGGCAGAGAGGTAGTGCAGGAACAGTAACAGATTGGGAAGTGTATTCGGCGGATCGTTGGTCTGTTGGGTGTCGAGGCGAAGGAATCACCTGCAACTGGGGTATCGGAACTTTCGACGCATCTGAACTTCTTCCGATCAACAACCCACCAAGAAACTTTCTCGGTTTCAATCTTCTCCCAGGTCTAACAGCGGCATGGGCTCGTCAGAAGATCGAAGGCGCAACTACATTCCACAATGGTAAGGCGACAGTTTCTTTCTGGATGCGTTGTGCAAAGATCGGAAACATGGTGGGTATCCGTCTGGTTCAGGATTTTCCGGGTGGCGGCGATCCTTCCGTGACCGTGTATGGTGATTCGTTTCAGCTTACGCCGACATTTCAGAAGTTCACATACACGTTTGACGTTCCTTCATTGAACGGCAAGAATCTGGGTAACATCGGCGGAACTCTACAGATCATCTTCGATTTCAATGCTCCAGCCCCATACTACAATGGTGATGTAGCAAATCAGCAAGGGCTGTTTGAGTTCACCAATGTTCAATTTGAAGCCGGCAGTGTTGCTACGGATTTTGAGCGCAGACCGGCGGCTTTGGAATTGCATCTGTGTCAGCGGTATTACGAGAAGAGTTACAGTCCAGAGGTGAACCCTGGCACAACAACTGTTCCAGGATCGGCTGGATCAGGTGCAAGAACGGGTTACTATCTGCATGCCCCTTGCACACAATTCACTGTCGCTAAGAGGGCGCCACCTTCAATTATGGTGTATAGCCCACAATCTGGTCAGAACGGCAATGTTGCAGAATACAACACGACTGCATCATTTGTGGCCAATCGTGTTGGTATCGTCCTCAATATCGGTCAAACCAACTTCGAGCTGATTTTGGGTAATGGTGATGCGACGCCCAATAACACAATCAGATGGCATTGGACAGCGGATTCGGAGCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7e8fba25f3cda64bf7bb334756e8c720536499079cf910398291e268c27ee32a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8750
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50