Protein

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Genbank accession
YP_009190570.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPPLKLQFSDSPAIQIFGYQTTMPYIDITTMRGMMPGVIASMLPDHSAVLAENCHFRYGVITPEHQMSEAEKTFAIKPKTIFHYRDDFWFAWTDVVDVIRSPIAQDPHGRIYYTDGRFPKVTDATIATKGDGNHPASSYRLGIPAPTTAPVCTVQQGGDVSDDNPNDDETRFYTETFVSDYGEEGPPGPASLEVTLRTPGTAVQLTLAPVPLQNANIKRRRIYRSASGGGEADFLLVAELDASVLSYTDKIPTKNLGPSLATWDYLPPPENMTGLCLMANGIAAGFAGNEVMFSEAYLPYAWPEVNRHTTAEDIVAICPLGTSLVVATKGEPYLFSGVSPSTISGSRIPSMQACLSRRSMVAMEGFVLYAGTNGLVSVDVNGNTALATEKIISPEQWQSQFNPTSIVAYSWRGDYIGCYTKPDGKQDVFVFSPANMDIRYLSTPFDCAWVDLAKDMMRVVTGDKMSVLAGGALPSTIRWHSKIFSLPERTSFSCIRVKSPAPERVGITVMADDVPVIHFAPGTFKGSVVRLPAATGQNWQVMVSGFGQVERITLSTSMSELPV
Physico‐chemical
properties
protein length:563 AA
molecular weight: 61327,12150 Da
isoelectric point:5,23751
aromaticity:0,09414
hydropathy:-0,09076

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009190570.1
1 563
Domain Start End Length (AA) Confidence
N-terminal 1 514 514 0,7555
Central domain 515 552 39 0,0091
C-terminal 553 563 10 0,9941
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-514
Central
515-552
C-terminal
553-563

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Ss-VASD
[NCBI] 		1675531 Uroviricota > Caudoviricetes > Sepvirinae > Oslovirus VASD >
Host Shigella sonnei
[NCBI] 		624 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009190570.1 [NCBI]
Genbank nucleotide accession
NC_028685 [NCBI]
CDS location
range 45620 -> 47311
strand +
CDS
ATGCCGCCTTTAAAACTTCAATTCAGTGACTCACCTGCCATTCAAATTTTCGGATACCAGACAACCATGCCTTATATCGATATAACAACTATGCGCGGGATGATGCCAGGCGTTATTGCATCTATGCTGCCAGATCATTCTGCTGTACTGGCAGAAAACTGTCATTTTCGCTATGGAGTGATCACGCCTGAACACCAGATGTCAGAGGCTGAGAAAACATTCGCGATTAAGCCGAAAACCATTTTTCATTACCGTGACGATTTCTGGTTTGCATGGACGGATGTGGTGGATGTGATCCGCAGTCCGATCGCTCAGGACCCCCACGGGCGTATTTACTACACTGACGGGCGTTTTCCTAAAGTGACGGATGCAACCATTGCCACAAAAGGGGACGGGAATCATCCGGCATCATCGTATCGTCTGGGGATCCCCGCGCCGACGACAGCACCTGTCTGTACTGTTCAGCAGGGCGGTGATGTTTCTGACGATAACCCGAATGATGACGAAACCCGGTTTTATACGGAAACCTTTGTCTCAGATTATGGTGAAGAAGGTCCGCCAGGTCCGGCGTCTCTGGAGGTAACACTCCGTACTCCGGGGACTGCGGTACAACTGACGCTGGCTCCGGTGCCATTGCAGAATGCCAATATTAAACGTCGCCGGATTTATCGCTCTGCATCAGGTGGAGGAGAAGCGGATTTTTTACTTGTGGCTGAACTGGATGCGTCAGTGCTCAGTTACACGGACAAAATACCAACGAAAAACCTTGGGCCTTCCCTGGCAACATGGGATTACCTGCCGCCACCGGAGAATATGACGGGTCTTTGCCTGATGGCTAATGGTATTGCCGCCGGGTTTGCCGGTAATGAAGTGATGTTTTCGGAAGCGTATCTGCCGTATGCATGGCCGGAAGTGAATCGTCACACGACGGCAGAAGATATTGTGGCTATCTGTCCGCTGGGAACGTCACTGGTGGTGGCGACAAAGGGGGAGCCTTATCTGTTCAGTGGTGTATCGCCTTCCACAATTTCTGGCTCCAGAATTCCTTCCATGCAGGCATGCCTGAGCCGAAGAAGCATGGTGGCGATGGAGGGATTCGTACTGTATGCCGGGACAAACGGTCTGGTATCTGTTGATGTAAACGGTAATACAGCACTGGCAACGGAAAAGATTATTTCACCAGAACAGTGGCAGAGTCAGTTTAACCCGACGTCCATTGTGGCTTATTCCTGGCGTGGTGACTATATCGGTTGTTACACAAAACCGGATGGTAAGCAGGATGTGTTTGTATTCAGTCCGGCTAACATGGATATCCGTTATCTCAGCACGCCGTTTGACTGTGCATGGGTTGATCTTGCAAAAGATATGATGCGCGTGGTGACAGGAGACAAAATGTCAGTGCTTGCCGGGGGGGCTCTGCCCTCCACGATAAGGTGGCATTCAAAAATTTTTTCATTACCTGAAAGAACCTCTTTTTCCTGTATCAGGGTGAAATCTCCGGCACCTGAGCGGGTGGGGATCACCGTTATGGCTGATGATGTTCCTGTGATTCATTTTGCGCCGGGTACGTTTAAGGGAAGTGTGGTGAGACTTCCGGCAGCAACCGGGCAAAACTGGCAGGTGATGGTATCCGGATTCGGGCAGGTGGAACGAATAACCCTGAGTACATCAATGTCGGAGCTGCCGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
be37ae842304f298c3e545abfda26daf1ea40ccc7dc252b6ef282f9c9f8fc032
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9346
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel Shiga Toxin 1a Converting Bacteriophage of Shigella sonnei with Close Relationship to Shiga Toxin Expressing Escherichia coli Carter,C.C., Fierer,J., Chiu,W.W., Strain,M. and Mehta,S. 2015 — GenBank