Protein

View in Explore
Genbank accession
YP_009835437.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,55
Protein sequence
MSDFSTREQVQKSEVIQDTMPTDKALDGEGSSLSGVQTGTNETLGTLARWVAGISKLLGETSRRKGAGKFHGPDIALTGTITSAGTVVTGSGTDFSTELSIGDFIAGDANEYREVQAIGGPTSLTLVKEFSSDIASAQSFKRIQTLAERLEKEGVGNIQIHIGATPPLNHLLCDGSAISRTTYARLFAVAPKTTSTVTISNATPGVVTWTGHGLKTGHTVQFSTTGALPTGVTSGTVYFIRRIDANTFHLYDTLANAMNTGATTGRVNTSSAGSGVHTGLCYYFGNGDGSTTFNIPDMRGVVPRGVGATAGYVQSASVALGEKIDDAFQDHYHREYYASGPADGAGPYKSVSSTGSVTGITNSTTNLTSVLTIREPVTTGSSGTPRVDTETKGKGLGLNFSIRY
Physico‐chemical
properties
protein length:404 AA
molecular weight: 42093,15260 Da
isoelectric point:6,31228
aromaticity:0,06931
hydropathy:-0,21238

Domains

Domains [InterPro]
DC_1200
STR
51–148
DC_1200 IPR037053 IPR023366
SSF88874
STR
155–404
SSF88874
YP_009835437.1
1 404
Architecture
STR
ATT
STR
STR 51-148 | ATT 149-192 | STR 193-404
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Leptospira phage LE3
[NCBI] 		2041382 Uroviricota > Caudoviricetes > Nylescharonvirus >
Host Leptospira biflexa
[NCBI] 		172 cellular organisms > Bacteria > Pseudomonadati > Spirochaetota > Spirochaetia > Leptospirales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009835437.1 [NCBI]
Genbank nucleotide accession
NC_048678.1 [NCBI]
CDS location
range 30032 -> 31246
strand +
CDS
ATGTCTGATTTTAGCACAAGAGAACAGGTTCAAAAATCGGAAGTCATCCAAGATACGATGCCGACTGATAAGGCACTAGATGGGGAAGGTAGCTCCCTGTCAGGAGTTCAAACAGGGACAAATGAAACGCTTGGGACTTTAGCAAGATGGGTCGCTGGTATTTCCAAATTACTCGGGGAAACATCCAGGAGAAAGGGAGCGGGTAAGTTTCACGGGCCAGACATAGCACTTACTGGAACTATTACATCTGCGGGAACAGTTGTAACTGGATCGGGAACTGACTTTTCAACAGAGCTTTCGATTGGAGATTTTATTGCCGGGGATGCGAACGAATACAGAGAAGTCCAAGCTATCGGTGGGCCAACGTCATTGACCTTGGTAAAAGAATTTTCTTCAGACATTGCATCTGCACAGTCTTTTAAAAGAATACAAACACTTGCGGAACGTTTAGAAAAAGAAGGCGTAGGGAATATCCAAATACATATTGGGGCAACGCCTCCATTAAATCATTTACTATGTGATGGATCTGCAATTTCAAGGACAACTTACGCAAGGCTTTTTGCAGTCGCTCCAAAAACAACATCAACTGTAACCATTTCGAATGCTACACCTGGAGTTGTGACTTGGACTGGGCACGGACTTAAAACAGGGCATACTGTTCAATTTTCCACAACAGGGGCTTTGCCGACTGGGGTAACGTCTGGAACCGTTTACTTTATTAGAAGAATCGACGCGAACACATTTCACTTATACGACACACTTGCAAATGCGATGAATACAGGAGCAACAACGGGGAGAGTGAATACTTCATCTGCAGGATCTGGGGTACATACAGGGCTTTGTTATTATTTTGGGAATGGAGATGGTTCAACAACTTTTAATATTCCTGATATGAGAGGGGTTGTTCCAAGAGGTGTCGGCGCAACCGCAGGGTATGTTCAATCAGCATCGGTTGCTCTTGGAGAAAAAATAGACGATGCATTTCAAGATCATTATCACAGAGAATACTATGCGTCTGGACCAGCCGATGGAGCCGGTCCATATAAATCTGTATCGAGTACTGGCTCAGTAACAGGTATTACAAATAGCACAACAAACCTGACTTCGGTTCTTACTATTAGAGAACCCGTAACAACTGGCTCGAGCGGTACTCCCAGGGTAGACACGGAAACAAAAGGCAAGGGGCTAGGATTAAATTTTTCAATTAGGTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e8d665777b891c404a50761554f6ed090991bc1baf75e9532e048018ef819d0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6835
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira Schiettekatte,O., Vincent,A.T., Malosse,C., Lechat,P., Chamot-Rooke,J., Veyrier,F.J., Picardeau,M. and Bourhy,P. 2018 30082683 GenBank